Where Can I Download Annotated Transposable Elements From Arabidopsis Together With Their Location On Chromosomes?

Question

[Biomonika (Noolean)]

Hi all! I wasnt successful trying to find files with annotated transposable elements on chromosomes from Arabidopsis. I am also interested in their specific locations on chromosomes. Any help will be appreciated :)

Answer 1

[Casey Bergman]

Your best bet for Arabidopsis genome annotation is TAIR, and the file you are looking for is this one (FTP link).

These data are based on the work of Buisine, Quesneville and Colot (Genomics 2008), for more information see: http://urgi.versailles.inra.fr/Data/Transposable-elements/Arabidopsis

[Biomonika (Noolean)]

Thank you very much! That is exactly what I needed.