Bioconductor GOSemSim problem for yeast

Question

[mahdijalili]

Dear all,

I have a problem when I try to use bioconductor GOSemSim package to calculate the GO semantic similarities between yeast.

geneSim("852494", "854869", ont = "MF", organism="yeast", measure="Resnik")

return below result:

[1] NA
Warning messages:
1: In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
2: In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'

Any comments or advice are welcome.

Thanks

Answer 1

[mahdijalili]

With thanks to Guangchuang on bioconductor support site:

https://support.bioconductor.org/p/64729/

Thanks.

[dago]

Happy that you fixed your problem. However, I would suggest you to do not double post, and to ask question about Bioconductor preferentially on the Bioconductor help page.