Are these steps correct? Galaxy

Question

[rus2dil]

I have aligned NGS six runs of a sample using BWA (galaxy platform). Then I merged them into one BAM file. Next I sliced the region of interest using SliceBAM in BED tools. After that I merged sequences in the resulting file using Merge command in Operate on Genomic Intervals. So the final result is a BED file. How can I convert this BED file into a FASTA file?

Answer 1

[marina.v.yurieva]

I don't think you can do it in Galaxy but you can convert with bedtools getfasta