Handling heterozygosity with VariScan

Question

[jsgounot]

Hi,

I'm currently trying to extract basic information from my data with VariScan (Pi, theta, tajima ...). Currently I export my data in phylip format and run it with the software, but it looks like it's not possible to use this format for unphased SNPs. I'm just wondering if there is a trick or if I absolutely need to convert my data in an other format like HapMap.

Thanks a lot.