consensus sequence of complex estructural variants

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10.0 years ago

user230613 ▴ 380

Hi all , I would like to know if there is any tool to create a consensus FASTA sequence having a vcf file with complex SV's such as inversiones, duplications, translocations... I am looking for something like bcftools consensus but for SV's.

Thank you.

consensus estructural variant • 2.3k views

ADD COMMENT • link updated 2.8 years ago by Ram 44k • written 10.0 years ago by user230613 ▴ 380

1

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If the SV is short Wham can provide the consensus. Delly also provides a consensus sequence.

ADD REPLY • link updated 2.8 years ago by Ram 44k • written 10.0 years ago by Zev.Kronenberg 12k

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