Patsccan output parser using perl

Question

[schmilblik]

Hello guys,

I would like to have some examples of patscan output parsers in perl or some links helping to learn how to do those parsers. I'll be grateful.

Answer 1

[biolab]

David Bartel lab published a Mol Cell paper (2004) to predict plant mirna targets. Their method was patscan followed by a perl parser, namely mircheck. This script can be downloaded from http://bartellab.wi.mit.edu/software.html. Detailed usage you can see the manual. Hope this helps.