Resources available for plant ortholog of rice genes
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9.8 years ago
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I would like to know any resources available for ortholog genes/proteins of a set of rice genes. For example, if I upload a list of genes and select the target plant organisms, it need to show the ortholog ids of the selected plants (any standard ids). I can go for such a search in Gramene database. But I would like to scan some more plant species. In inparanoid, there are many plant species with their sequences. In that case, I have to manually align each sequences, fix a cut off and select the ortholog candidates. I am curious to know any resources provide an analyzed data.

gene genome rice plant-genes ortholog • 2.2k views
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9.8 years ago

Try the BioMart interface of EnsemblPlants. It probably has the same species as in Gramene though.

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