Transcription factor Visualization

Question

[datanerd]

HI all,

I have 5 genes that I want to find a TF binding motif and visualize it based on the position and number of sites.

I did try RSAT for it (it is used for humans??) , also the graph didn't seem very pretty, I would rather prefer a pretty, colorful graph.

Thanks!

Mamta

Answer 1

[dago]

If you want to have a graph that shows the conserved DNA domain where the TF binds, weblogo is a tool commonly used.

Answer 2

[Mary]

I have always liked the way Melina II shows the data.