A tool for computing Gene Ontology Semantic Similarity

Question

[Farhad]

I want to compute semantic similarity of proteins given their uniprotID,

I have found some online tools like http://www.paccanarolab.org/gosstoweb/, but it is busy all the time and providing organism name is required, I have a mixed list of proteins which include some viral proteins,

Any similar online tool or a package in R will be really helpful.

Your help would be really appreciated.

Answer 1

[Jean-Karim Heriche]

In R/bioconductor, there's GOSemSim, csbl.go, SemDist, GoSim and probably a few more.