Hi everyone,
I'm working on a comparative modelling project. Basically I'm testing my algorithm on proteins of which structures are already known in the PDB database. Just to test the accuracy and the efficiency of my developed algorithm.
In order to assess the algorithm I want to compare my structure that has been computationally build by my algorithm, with the real structure that is found in PDB. I want to do this by computing the percentage of residues that are with 5 angstrom deviation (find the native overlap) between the two structures (one calculated computationally by me and the other by present in PDB).
Is there any online tool for that or any software that I can download, that takes two PDB files as input and returns the % of residues that are within 5 angstrom deviation?
Thank you.
