Question

Prediction of operon in bacterial genomes

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9.8 years ago

dago ★ 2.8k

Is there any tool available for predicting operon in whole bacterial genomes?

I found many papers on the topic, but not tools available.

annotation genome operon • 3.7k views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.8 years ago by dago ★ 2.8k

Ram · Answer 1 · 2016-01-07

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9.0 years ago

2351688559 ▴ 20

You can try DOOR 2.0 database

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.0 years ago by 2351688559 ▴ 20

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This looks indeed interesting

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 9.0 years ago by dago ★ 2.8k

Ram · Answer 2 · 2015-02-25

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9.8 years ago

jing ▴ 10

Have you tried Prodigal?

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.8 years ago by jing ▴ 10

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well, as far as I know Prodigal is a Gene finder tool, not an operon finding tool.

ADD REPLY • link 9.8 years ago by dago ★ 2.8k

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Hi! I read your post about COG annotation and operon prediction. Now I 'm facing the same problem. Have you got your problems solved? I guess I may need your help! Thanks!

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 9.4 years ago by 2351688559 ▴ 20

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Hi, sorry for the late answer. I guess that looking at the questions on biostars you can find the answer you need. Otherwise you can open another post and I am sure you will get help.

ADD REPLY • link 9.0 years ago by dago ★ 2.8k

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Hi! How are you?

Have you got your operon predicted? Would you mind telling me what you are going to do with the predictions? I have got my predictions, but I have difficulties on how to analyze them.

Thank you!

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 9.0 years ago by 2351688559 ▴ 20