Append gene annotation to cuffdiff output
1
1
Entering edit mode
9.8 years ago
chan1157 ▴ 10

Hi,

I have cuffdiff outputs and want to add gene annotation to them.

Is there a program can help me with this? I attached the two files, cuffdiff output and gene annotation.

Cuffmerge?Cuffcompare?

The gene annotation file I have is a .txt file form apple.

Thank you,
HY

RNA-Seq • 1.8k views
ADD COMMENT
0
Entering edit mode
9.8 years ago
Renesh ★ 2.2k

You can easily do this with MySQL database. Upload the both cuffdiff output table and annotation table in MySQL and left join it based on the same id in both table.

ADD COMMENT

Login before adding your answer.

Traffic: 1865 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6