Tool for predicting RNA binding protein

Question

[EVR]

Hi,

I have a eukaryotic transcriptome of non-model oragnism assembled using de novo approach with Trinity. I would like find the possible RNA-binding proteins for the transcripts. Is there any tool available for predicting the possible binding proteins apart from RBPmap.

Kindly Guide me

Answer 1

[dago]

Maybe you could take a look at this:

RBPmap: a web server for mapping binding sites of RNA-binding proteins

[EVR]

Thank Dago, I like RBAPmap server but I would like output only the transcript_ids and their corresponding binidng protein but in RBP outputs everything inluding th th huge list of possbile motifs and their score which I dont require.

[dago]

I did not read that ypu wrote "aprt from RBPmap". Sorry

Answer 2

[liushiyong]

http://rnabinding.com/RBPPred.html