Convert tagAlign file to bigBed / bigWig

Question

[senasplage]

Hi,

I have a bunch of tagAlign files from the Roadmap epigenome, and I would like to convert them into bigBed anr/or bigWig.

I never used tagAlign files before. Does anyone knows how to handle those format? Is there any tool out there to convert them into common formats?

Thanks

[senasplage]

Trying this at the moment:

bedtools genomecov -i $file.tagAlign -bg  -g $hg19.genome > $filename.bedGraph
bedGraphToBigWig $filename.bedGraph  $hg19.genome    $filename.bw

Answer 1

[senasplage]

FYI This seems to work:

bedtools genomecov -i $file.tagAlign -bg  -g $hg19.genome > $filename.bedGraph
bedGraphToBigWig $filename.bedGraph  $hg19.genome    $filename.bw