R Circos: Command Error

Question

[ewholling]

Hello all,

I'm currently using the RCircos package, but having some trouble with a specific command. Since my labels are too close together and overlapping, I want to use the RCircos.Get.Gene.Label.Locations(genomic.data) function. My data is working with the other commands, but when I try this command the following error message comes up.

> genomic.data <- chrom.data
> RCircos.Get.Gene.Label.Locations(genomic.data)
Error in order(the.chr$Location) : argument 1 is not a vector

Does anyone know how to resolve this issue? My data format is: Chromosome, chromStart, chromEnd, Gene as directed.

Thanks in advance.

[Neilfws]

There is some problem with your data; the order() function expects a vector of values that it can sort and is not finding it. You need to show a real example of your data, not just describe it.