Mapping SNPs to exon number

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9.8 years ago

reza.jabal ▴ 580

I have a list of SNPs and variants coordinate that I'd like to map them to the exons of a particular gene. Installing the "Variation toolkit" is not an option for me. I was wondering if there's a way to process it through the galaxy!

Any other options/thoughts are welcome!

SNP alignment sequencing • 1.7k views

ADD COMMENT • link updated 2.6 years ago by Ram 44k • written 9.8 years ago by reza.jabal ▴ 580

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Installing the "Variation toolkit" oh you're right , all this stuff should be flagged as deprecated :-)

Search biostars for bedtools, vep, snpeff....

ADD REPLY • link updated 2.6 years ago by Ram 44k • written 9.8 years ago by Pierre Lindenbaum 164k

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Deprecated!!! I like that ;)

ADD REPLY • link updated 2.6 years ago by Ram 44k • written 9.8 years ago by reza.jabal ▴ 580

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