Finding pathways using Protein GI accession numbers

Question

[HalSky]

Hello,

I have a list of Protein GI accession numbers. I know that we can enter a list of gene names into REACTOME to obtain the related pathways. I would like to do this using Protein GI numbers only, on REACTOME and/or KEGGS, or it could be any other online database. Does anyone have an idea?

Thanks

[vibes1002003]

Hello,

You can convert your Protein GI accession numbers to choice of IDs or IDs used in those programs using following two links:

• http://biodbnet.abcc.ncifcrf.gov/db/db2db.php#biodb
• http://central.biomart.org/converter/#!/ID_converter/gene_ensembl_config_2

then converted IDs like Gene Names can used in Reactome or similar kind of databases.

Hope it helps!

Answer 1

[verma]

You can use Kegg (Kyoto Encyclopedia of genes and genomes) with protein GI accession numbers for comparative studies of your protein and also can obtain numerous related biological pathways within it. In addition, you can also use PharmGkb.

Regards,
Garima Verma