Command line blast atlas
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9.7 years ago
Lee Katz ★ 3.2k

Hi, what is the community's suggestions on blast atlas software? I personally would like

  1. Command line on Linux
  2. Batching/scalable (not point & click for 100 genomes)
  3. Integration with a standardized viewer, e.g., GView, or creates a PDF or PS at the end
  4. Not a virtual machine

The ones I know about are either a web page interface, GUI (too much point/click), or a virtual machine. Basically, how do I cram 100 bacterial genomes into a blast atlas easily? Thank you!
command-line batch blast-atlas • 2.3k views
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Bumping this to the top, as it was probably not seen over the weekend

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Hi @Lee Katz. Have you found software to do this? Thanks!

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