GO enrichment analysis

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9.7 years ago

Maria • 0

Hello,

I'm having trouble getting the Gene ontology enrichment analysis of a given dataset to compare the best p values between Aracne and TOM. Please help.

Thanks

GO-enrichment-analysis R WGCNA • 3.0k views

ADD COMMENT • link updated 2.5 years ago by Ram 44k • written 9.7 years ago by Maria • 0

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You forgot to post a question, or the problem you're having.

ADD REPLY • link updated 2.5 years ago by Ram 44k • written 9.7 years ago by karl.stamm 4.1k

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Hi

I have this code GOenr=GOenrichmentAnalysis(moduleColors, allLLIDs, organism="mouse", nBestP=5); for the GOenrichmentAnalysis

I'm having issues getting the results using Aracne, CLR to compare it with TOM, to see which network construction method is better. What do I need to do in order to get the results from different adjacency such as Aracne, CLR, etc.

ADD REPLY • link updated 2.5 years ago by Ram 44k • written 9.7 years ago by Maria • 0

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