PBcR using less than 25X for error correction in PacBIo

Question

[merodev]

Hello everyone,

When running PBcR for pacbio data, how do I select only the longest 15X coverage for assembly rather than the default 25X?

Thanks,

-Dave

Answer 1

[orange]

Hi, you can use "assemble = 15". Use it in command line or spec.file.