r3Cseq rat genome

Question

[izhak.kehat]

Hi I want to analyse 4C-seq data on rat genome. r3Cseq does not support the rat genome.

Any ideas on how to modify it, or alternative packages?

Answer 1

[Evgeniia Golovina]

Try to use Basic4Cseq package.

[Evgeniia Golovina]

There are also

1. 4Cseqpipe
2. FourCSeq R package

[tlgolan]

Hi, Perhaps you know if I can use the FourCSeq R package if I don't have biological replicates? Thanks