Question

Best software to identify differentially methylated regions in Chipseq data?

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10.1 years ago

madkitty ▴ 690

I'd like to hear opinions of those using chip seq methylation data.

What is the best software to find differentially methylated regions in chipseq data?

ChIP-Seq differentially methylated genes • 2.9k views

ADD COMMENT • link updated 2.5 years ago by Ram 44k • written 10.1 years ago by madkitty ▴ 690

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@madkitty...not sure what you mean for "chip seq methylation data"...chip seq or methylation? are you trying to integrate them? what have you tried so far? which kind of methylation data do you have? also, writing in bold doesn't give you a faster answer..

ADD REPLY • link 9.7 years ago by TriS ★ 4.7k

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I meant CHIPSeq data .. oops :)

ADD REPLY • link updated 2.5 years ago by Ram 44k • written 9.7 years ago by madkitty ▴ 690

score 1 · Accepted Answer · 2015-03-26

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9.7 years ago

Devon Ryan 104k

You can't identify differentially methylated regions from ChIPseq data. You can from MeDIPseq, though.

ADD COMMENT • link 9.7 years ago by Devon Ryan 104k