Entering edit mode
9.7 years ago
win
▴
990
Hi all,
I have a few different VCF files produced from three different variant detectors and I want to perform concondance analysis in a pairwise manner. I would like to know the % overlap between VCF files in terms of detected variants and if possible the genotype coverage for each variant.
Are there any tools out there which can help me in this process and preferred would be tools that can also produce charts/ chart data.
Any help appreciated.
