bcftools extract data
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9.6 years ago
sacha ★ 2.4k

Without awk, only with bcftools, is there a way to view selected data from a vcf file?

For example, show only Depth value, something like:

bcftools view a.vcf -select=DP
extract bcftools • 2.3k views
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Entering edit mode
9.6 years ago
sacha ★ 2.4k

Sorry, I just found the answer :

bcftools query: Extracts fields from VCF/BCF file and prints them in user-defined format

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