Question

Gene Network construction

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9.6 years ago

alpha09 ▴ 10

I want to know what are different approaches for construction of a gene network of expression data. Approach that would give best results.

I have tried cladist and cytoscape and GenNet (R package).

RNA-Seq next-gen • 2.8k views

ADD COMMENT • link updated 2.4 years ago by Ram 44k • written 9.6 years ago by alpha09 ▴ 10

Ram · Answer 1 · 2015-04-04

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9.6 years ago

Na Sed ▴ 310

There are many packages to construct gene networks. Some of them are 'WGCNA', 'minet', 'bnlearn', 'spacejam', and 'space' packages.

ADD COMMENT • link 9.6 years ago by Na Sed ▴ 310

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Are the packages give directionality to network?

ADD REPLY • link updated 2.4 years ago by Ram 44k • written 9.6 years ago by alpha09 ▴ 10

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Some of them, yes.

ADD REPLY • link 9.6 years ago by Na Sed ▴ 310