Where to find drug response data on the NCI60

Question

[zero_hsy]

Hello:

I want to find drug response data on the NCI60 like IC50 value.

Could anyone tell me where can I find? Thanks a lot!

Answer 1

[Sean Davis]

http://discover.nci.nih.gov/cellminer/home.do

[zero_hsy]

Thanks a lot!

Answer 2

[cannin]

We have a developed an R package for the CellMiner:

• http://bioconductor.org/packages/3.1/bioc/html/rcellminer.html
• http://bioconductor.org/packages/3.1/data/experiment/html/rcellminerData.html

We provide a tutorial and describe how to get the drug response values for the NCI-60 cell lines you asked for here.

This package will be in the next release of Bioconductor and requires R 3.2 which will not be officially out until April 16. If you are using OS X, R 3.2 is now available here

Here is a brief introduction to the package.

[zero_hsy]

Thanks a lot!! It realy help me a lot!

Answer 3

[Ron]

Drug Cell line Browser

It has drug data for Sanger,CCLE and Heiser Cell lines.