Question

Indel Database for download

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9.6 years ago

psmirin • 0

Hello,

I am looking for DB that can be download and have the data on indels and if its frameshift/non frameshift. similar to what is done by ANNOVAR.

Thank you for your help,

next-gen • 2.3k views

ADD COMMENT • link updated 2.4 years ago by Ram 44k • written 9.6 years ago by psmirin • 0

Ram · Answer 1 · 2015-04-12

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9.6 years ago

Sean Davis 27k

You could start with 1000genomes, EXaC, NHLBI ESP VCFs and then run Annovar on one or more of those?

ADD COMMENT • link updated 2.4 years ago by Ram 44k • written 9.6 years ago by Sean Davis 27k

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Thank you, But I don't want to use ANNOVAR, I am looking for some DB that can be download. Any suggestions?

ADD REPLY • link updated 2.4 years ago by Ram 44k • written 9.6 years ago by psmirin • 0

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So, you are looking for something like Annovar output for the datasets I mentioned in my answer?

ADD REPLY • link 9.6 years ago by Sean Davis 27k

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I actually thought of something similar to dbNSFP but for short indels.

Giving it a second thought I suppose such database does not exist since there are infinity indels possibilities.

Thanks

ADD REPLY • link 9.6 years ago by psmirin • 0