how to plot chromosomal distribution of lncRNA

Question

[dineshtripathy9658]

I want to know how the GC content calulations can be made easily for genome. And also how to plot chromosomal distribution of lncRNA

[Ido Tamir]

these are 2 questions. Please split them up and elaborate a little bit more what exactly the input and output should be.

[PoGibas]

For GC content check this question: What Is The Gc-Content Across Different Human Chromosomes?

For lncRNAs - you can do this easily using ggplot. Check this answer: Plotting Density Of Snps On Chromosomes

Answer 1

[Michael]

Two questions, single answer: use a genome browser such as UCSC, GBrowse, JBrowse, Ensemble genome browser which are preferentially already available online and pre-loaded with lncRNA tracks for model organisms for your genome of interest. Which genome are you working with? For more information see: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?

PS: this question is almost a 'close' for duplicate.