1000 genomes data fastq

Question

[jyu429]

Does 1000 genomes provide sequenced genomes in the form of fastq or fq with base pair length >= 70 and >= 30 coverage? Thanks!

[Sebastian Boegel]

This is all exome-seq, right? No, RNA-Seq available?

[Sam]

There are RNA-Seq data on the 1000 genome project. You can find the information here

Answer 1

[Sam]

Yes. You can check this spreadsheet which contains almost all of the information that you will need.

[jyu429]

Thanks! How do I tell what coverage each entry is though? I see a column that says "% Targets Covered to 20x or greater" in the Final Phase sheet but is there additional information?

[Sam]

What kind of additional information you need? You can find more information in the sequence.index file. However, for the coverage part, this is the only information I found so far.