database that links EntrezGeneIDs and EnsemblIDs
3
1
Entering edit mode
9.7 years ago
m_02 ▴ 20

i need both id types i.e(ensembl proteinIDs and KEGG) translated to EntrezGeneIDs.is there any database that links EntrezGeneIDs and EnsemblIDs?

database • 1.9k views
ADD COMMENT
1
Entering edit mode
ADD COMMENT
0
Entering edit mode
9.7 years ago
cdsouthan ★ 1.9k

UniProt query = 18,547

http://www.uniprot.org/uniprot/?query=database%3A%28type%3Aensembl%29+AND+database%3A%28type%3Ageneid%29+AND+reviewed%3Ayes+AND+organism%3A%22Homo+sapiens+%28Human%29+[9606]%22+AND+database%3A%28type%3Akegg%29&sort=score

database:(type:ensembl) database:(type:geneid) database:(type:kegg) AND reviewed:yes AND organism:"Homo sapiens (Human) [9606]"

ADD COMMENT
0
Entering edit mode
9.7 years ago
David W 4.9k

Biomart (linked to by Sean above) is pretty much your first port of call for all id-mapping problems.

In this case, ensembl also has a REST endpoint for gathering cross refs:

http://rest.ensembl.org/xrefs/id/ENST00000288602?content-type=application/json;

ADD COMMENT

Login before adding your answer.

Traffic: 1517 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6