EdgeR output normalization?
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9.6 years ago
mahnazkiani ▴ 60

I have mean count output data from 3 biological reps that I got from edgeR implanted in CLC, I'm interested to do network analysis using these mean count data, do I need to do normalization before that or they are already normalized with CalcNormFactors-method-TMM?

Thanks

RNA-Seq • 3.1k views
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You're already paying CLC large sums of money for their software, they'll answer the phone if you call and ask them this.

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