How to visualize a bam file in UCSC Genome Browser
3
0
Entering edit mode
9.6 years ago
Azhar ▴ 50

I have a 1.31 GB bam file, is it too big to view in ucsc browser, if it is then what is the alternate solutions
ChIP-Seq • 10k views
ADD COMMENT •
2
Entering edit mode

Just searching a little bit on google...:

My recommendation is IGV.

ADD REPLY •
2
Entering edit mode
9.5 years ago

Use bigwig, for conversion and visualizations, check
ADD COMMENT •
0
Entering edit mode
9.6 years ago
Qi Zhao ▴ 50

You may try IGV to visualize your data. Here is the web link: http://www.broadinstitute.org/igv/

Good luck
ADD COMMENT •
0
Entering edit mode

You can also download the data tracks from UCSC and add it IGV.

ADD REPLY •
0
Entering edit mode
9.6 years ago

Try this link: I tried to visualize the bam file in IGV or genome viewer
ADD COMMENT •
1
Entering edit mode

How to install IGV veiwer cz it is jnlp file not exe.

ADD REPLY •
0
Entering edit mode

Download IGV_2.3.23.zip from this link: http://www.broadinstitute.org/software/igv/download then unzip it in unzipped file you can find an icon as igv.jar. Click to install.

Ask any question you have please

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 2573 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6