Any database on cancer related snp information

Question

[Qi Zhao]

Is there any database can make me find the cancer related snp information. I have tried CaSNP, but it not work at present. thanks!

[PoGibas]

Try searching here on biostars.

Btw: CaSNP is not what you need - "CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data".

[Qi Zhao]

oh yes, you are right, thanks!

[Qi Zhao]

Thank you guys all! I get what I want at http://www.ncbi.nlm.nih.gov/clinvar

[Ram]

Heads up: ClinVar specializes in pathogenic germline mutations and is not a great resource for cancer mutations - not as good as COSMIC at least.

Answer 1

[poisonAlien]

• cosmic: catalogue of somatic mutations.
• CIViC: Clinical Interpretation of variants in cancer from washu.
• DoCM: Database of curated mutations from washu.

[Qi Zhao]

Thanks! :)

Answer 2

[Uma A]

Try COSMIC cancer database from Sanger Institute.

[Qi Zhao]

Thanks! :)