PSEA- protein set enrichment analsyis

Question

[kanwarjag]

I have list of mouse protein differentially expressed, I want to do protein enrichment analysis. I found on google one PSEA but could not find any tool or when it was published. I would appreciate if some one can point me to this tool or any other tool for doing enrichment analysis in proteins. BTW can I use GSEA if I convert ids (human Gene) or it is totally wrong to think about GSEA in studying proteins.

Answer 1

[mark.ziemann]

Yes you can use gene names as proxies for protein names as long as you understand limitations (1 gene could encode more than 1 protein).