Question

access to dataset in insilicodb

0

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9.5 years ago

Shamim Sarhadi ▴ 220

When I write this command in R

eset1 = getDataset("GSE3188", "GPL570", norm="FRMA", features = "gene", curation = 9272)

after loading library(insilicobd)

R says:

INSILICODB: You are not allowed to access this dataset.

I don't know what is problem and how can I solve it?

R • 2.1k views

ADD COMMENT • link updated 21 months ago by Ram 44k • written 9.5 years ago by Shamim Sarhadi ▴ 220

Ram · Answer 1 · 2015-05-10

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9.5 years ago

PoGibas 5.1k

From the documentation: 1.2 Check the accessibility of data

You need to login to access datasets and datasetinfo

ADD COMMENT • link updated 21 months ago by Ram 44k • written 9.5 years ago by PoGibas 5.1k

0

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Thank you Pgibas

ADD REPLY • link updated 21 months ago by Ram 44k • written 9.5 years ago by Shamim Sarhadi ▴ 220

Ram · Answer 2 · 2016-05-01

I have the same problem. and I have logged in using username and md5 hash password.

Commands used:-

biocLite("inSilicoDb")
library(inSilicoDb)
install.packages('digest', repos='http://cran.us.r-project.org')
library(digest)

InSilicoLogin("************@gmail.com", digest::digest('PASSWORD', algo='md5', serialize=FALSE));
eset42743 = getDataset("GSE42743", "GPL570", "FRMA", genes=TRUE);

It shows warning:

INSILICODB: The bioinformatics pipeline is now running. An email will be sent when computation is finished.
  INSILICODB: Dataset GSE42743, GPL570, CURESET, PROBE, ORIGINAL, 20339, RNA, Oral Cavity Cancer Compared to Adjacent "Normal" Tissue [Validation Set], queued, 110, GSE42743GPL570_RNA_ORIGINALPROBE_20339.RData