DNA Promoter Region Viewer and Search for Motifs

Question

[mitchez]

Hallo,

I am looking for a tool to view DNA sequences (up 1000 KB) which allows highlighting of short DNA stretches and the possibility to search for sequence motifs in IUPAC code.

Do you a tool which can do the job ? Thanks for the advice.

Answer 1

[verma]

Hey Hello Mitchez,

You can surely view DNA sequences by cluster x or notepad as well also chimera can also helps you to sort this query it has sequence viewer function within it. Also, for DNA sequences (up 1000 KB) you can use ugene. Yes, there is a possibility to search for sequence motifs in IUPAC code with chimera there is a search sequence option within it. There is also another software called ugene you can try also that.

Hope it helps.

Regards,
Garima Verma