Biology is not my expertise, which makes it harder to find specific stuff since I lack the terminology. But I do possess some basic information.
Nonetheless, I am looking for a site where I can download the list of SNPs (plain-text) that are sequenced for different machines. Preferable also for RNA and epi-genetics.
Could someone guide me in the right direction?
What do you mean by SNPs sequenced for different machines? You are referring to Single Nucleotide Polymorphisms, right? It's a biological phenomenon and doesn't depend on the machine you use to sequence it.
We have a couple of SNPs (Single Nucleo...) indeed. But the Illumnia CytoSnp 12 sequences 298K SNPs, whereas another Illumnia sequences 730K, 3M - same principle for other brands. Different kinds of chips can be inserted into a sequencing machine - all with different price-cards. The 2 examples given (Illumnia) covers +- 200K same SNPs, the other are different
Ah, so you're looking for the list of SNPs (in human genome) on which these kinds of (microarray) chips are based? I suppose this is a proprietary information, but I'm not an expert in this domain.