Biopython ; pdb file parsing
0
0
Entering edit mode
10.2 years ago

How do I extract a specific residue from a pdb file though biopython? for example I have to extract 23,24th and 27th residue only. How do I do that?

Here is my code:

from Bio.PDB import *
from itertools import groupby
from operator import itemgetter
parser=PDBParser()
structure=parser.get_structure('X', '4wwt_loop_mcannotate.pdb')
faa=open('4wwt_loop_mcannotate.pd','w')
#fasta=[]
reslist=[]
structure=parser.get_structure('X' , '4wwt_loop_mcannotate.pdb')
for model in structure:
    for chain in model:
        for residue in chain:
            #few=residue.get_id[1]
            reslist.append(residue.get_id())
            faa.write(residue.get_resname().strip())
faa.close()
residuelist=[]
for items in reslist:
    for elemts in items:
        if elemts==' ':
            continue
        else:
            residuelist.append(elemts)
fraglist=[]
for k,g in groupby(enumerate(residuelist), lambda(i,x):i-x):
    fraglist.append(map(itemgetter(1),g))
print fraglist
myfrags=[]
myfragment=''
for ies in fraglist:
    for item in ies:   
        for model in structure:
            for chain in model:
                for residue in chain:
                    if item in residue.get_id():
                        myfragment+=residue.get_resname().strip()
                        myfragment+=str(item)
                        myfrags.append(myfragment)
                        myfragment=''
print myfrags

and this is the output I am getting

[[2724, 2725], [2741, 2742, 2743, 2744, 2745, 2746], [2792, 2793, 2794, 2795, 2796]]
['C2724', 'C2725', 'G2741', 'U2742', 'G2743', 'G2744', 'A2745', 'U2746', 'A2792', 'A2793', 'U2794', 'C2795', 'G2796']

while I want the output as set of fragments, like [CC,GUGGA, UAAUCG]

Please if someone could help

PDB biopython • 2.7k views
ADD COMMENT
0
Entering edit mode

Can you show your pdb file? Is it taken form Protein data bank?

ADD REPLY
0
Entering edit mode

No it's generated by a tool. here it is:

ATOM A16HY P C 12724 -52.726 -98.396 -23.094 1.00 83.28 P
ATOM A16HZ OP1 C 12724 -53.551 -97.182 -22.818 1.00 79.93 O
ATOM A16I0 OP2 C 12724 -52.137 -98.580 -24.459 1.00 69.10 O
ATOM A16I1 O5' C 12724 -51.480 -98.583 -22.106 1.00 80.29 O
ATOM A16I2 C5' C 12724 -51.657 -99.000 -20.725 1.00 73.75 C
ATOM A16I3 C4' C 12724 -50.503 -99.839 -20.223 1.00 66.04 C
ATOM A16I4 O4' C 12724 -50.434-101.079 -20.965 1.00 67.14 O
ATOM A16I5 C3' C 12724 -49.122 -99.227 -20.393 1.00 65.11 C
ATOM A16I6 O3' C 12724 -48.762 -98.365 -19.343 1.00 59.91 O
ATOM A16I7 C2' C 12724 -48.203-100.436 -20.381 1.00 66.57 C
ATOM A16I8 O2' C 12724 -47.717-100.809 -19.110 1.00 69.64 O
ATOM A16I9 C1' C 12724 -49.074-101.484 -21.074 1.00 69.82 C
ATOM A16IA N1 C 12724 -48.706-101.585 -22.493 1.00 68.29 N
ATOM A16IB C2 C 12724 -47.487-102.186 -22.806 1.00 64.75 C
ATOM A16IC O2 C 12724 -46.792-102.641 -21.887 1.00 60.40 O
ATOM A16ID N3 C 12724 -47.107-102.274 -24.099 1.00 66.20 N
ATOM A16IE C4 C 12724 -47.892-101.787 -25.058 1.00 65.64 C
ATOM A16IF N4 C 12724 -47.479-101.907 -26.318 1.00 71.03 N
ATOM A16IG C5 C 12724 -49.131-101.147 -24.766 1.00 63.43 C
ATOM A16IH C6 C 12724 -49.491-101.058 -23.481 1.00 66.01 C
ATOM A16II H5' C 12724 -52.591 -99.575 -20.635 1.00 73.75 H
ATOM A16IJ H5'' C 12724 -51.764 -98.110 -20.087 1.00 73.75 H
ATOM A16IK H4' C 12724 -50.720 -99.951 -19.150 1.00 66.04 H
ATOM A16IL H3' C 12724 -49.072 -98.612 -21.304 1.00 65.11 H
ATOM A16IM H2' C 12724 -47.244-100.258 -20.889 1.00 66.57 H
ATOM A16IN HO2' C 12724 -47.125-101.610 -19.201 1.00 69.64 H
ATOM A16IO H1' C 12724 -48.927-102.465 -20.600 1.00 69.82 H
ATOM A16IP H41 C 12724 -48.042-101.553 -27.065 1.00 71.03 H
ATOM A16IQ H42 C 12724 -46.606-102.351 -26.518 1.00 71.03 H
ATOM A16IR H5 C 12724 -49.767-100.742 -25.567 1.00 63.43 H
ATOM A16IS H6 C 12724 -50.432-100.554 -23.215 1.00 66.01 H
ATOM A16IT P C 12725 -48.507 -96.849 -19.665 1.00 61.20 P
ATOM A16IU OP1 C 12725 -48.294 -96.170 -18.358 1.00 67.89 O
ATOM A16IV OP2 C 12725 -49.586 -96.410 -20.597 1.00 54.80 O
ATOM A16IW O5' C 12725 -47.082 -96.832 -20.385 1.00 53.96 O
ATOM A16IX C5' C 12725 -45.953 -97.359 -19.673 1.00 54.51 C
ATOM A16IY C4' C 12725 -44.809 -97.649 -20.602 1.00 56.51 C
ATOM A16IZ O4' C 12725 -45.095 -98.818 -21.414 1.00 64.30 O
ATOM A16J0 C3' C 12725 -44.501 -96.576 -21.621 1.00 58.06 C
ATOM A16J1 O3' C 12725 -43.733 -95.569 -21.004 1.00 63.29 O
ATOM A16J2 C2' C 12725 -43.707 -97.358 -22.651 1.00 57.84 C
ATOM A16J3 O2' C 12725 -42.378 -97.557 -22.228 1.00 53.08 O
ATOM A16J4 C1' C 12725 -44.513 -98.658 -22.706 1.00 62.80 C
ATOM A16J5 N1 C 12725 -45.593 -98.594 -23.703 1.00 62.23 N
ATOM A16J6 C2 C 12725 -45.268 -98.598 -25.064 1.00 64.49 C
ATOM A16J7 O2 C 12725 -44.079 -98.710 -25.399 1.00 65.89 O
ATOM A16J8 N3 C 12725 -46.257 -98.488 -25.979 1.00 66.16 N
ATOM A16J9 C4 C 12725 -47.525 -98.369 -25.578 1.00 65.14 C
ATOM A16JA N4 C 12725 -48.469 -98.267 -26.513 1.00 68.49 N
ATOM A16JB C5 C 12725 -47.881 -98.358 -24.200 1.00 62.61 C
ATOM A16JC C6 C 12725 -46.893 -98.469 -23.305 1.00 61.27 C
ATOM A16JD H5' C 12725 -46.245 -98.281 -19.148 1.00 54.51 H
ATOM A16JE H5'' C 12725 -45.632 -96.639 -18.905 1.00 54.51 H
ATOM A16JF H4' C 12725 -43.960 -97.759 -19.911 1.00 56.51 H
ATOM A16JG H3' C 12725 -45.371 -96.063 -22.057 1.00 58.06 H
ATOM A16JH H2' C 12725 -43.597 -96.865 -23.628 1.00 57.84 H
ATOM A16JI HO2' C 12725 -41.768 -96.967 -22.757 1.00 53.08 H
ATOM A16JJ H1' C 12725 -43.855 -99.493 -22.989 1.00 62.80 H
ATOM A16JK H41 C 12725 -49.429 -98.177 -26.247 1.00 68.49 H
ATOM A16JL H42 C 12725 -48.218 -98.281 -27.481 1.00 68.49 H
ATOM A16JM H5 C 12725 -48.930 -98.262 -23.883 1.00 62.61 H
ATOM A16JN H6 C 12725 -47.132 -98.459 -22.231 1.00 61.27 H
ATOM A16X8 P G 12741 -45.729 -97.496 -38.128 1.00 61.00 P
ATOM A16X9 OP1 G 12741 -45.253 -98.012 -39.435 1.00 61.05 O
ATOM A16XA OP2 G 12741 -47.050 -97.932 -37.567 1.00 53.35 O
ATOM A16XB O5' G 12741 -44.616 -97.745 -37.019 1.00 62.23 O
ATOM A16XC C5' G 12741 -43.349 -97.059 -37.082 1.00 61.78 C
ATOM A16XD C4' G 12741 -42.702 -97.060 -35.721 1.00 65.26 C
ATOM A16XE O4' G 12741 -43.554 -96.382 -34.763 1.00 64.50 O
ATOM A16XF C3' G 12741 -42.516 -98.417 -35.054 1.00 73.79 C
ATOM A16XG O3' G 12741 -41.471 -99.211 -35.622 1.00 79.47 O
ATOM A16XH C2' G 12741 -42.233 -97.987 -33.620 1.00 68.77 C
ATOM A16XI O2' G 12741 -40.918 -97.485 -33.476 1.00 70.39 O
ATOM A16XJ C1' G 12741 -43.250 -96.854 -33.450 1.00 62.92 C
ATOM A16XK N9 G 12741 -44.483 -97.263 -32.771 1.00 51.07 N
ATOM A16XL C8 G 12741 -45.733 -97.437 -33.316 1.00 44.48 C
ATOM A16XM N7 G 12741 -46.627 -97.803 -32.438 1.00 41.81 N
ATOM A16XN C5 G 12741 -45.927 -97.874 -31.241 1.00 41.10 C
ATOM A16XO C6 G 12741 -46.365 -98.229 -29.930 1.00 38.57 C
ATOM A16XP O6 G 12741 -47.489 -98.580 -29.558 1.00 35.95 O
ATOM A16XQ N1 G 12741 -45.328 -98.162 -29.009 1.00 39.26 N
ATOM A16XR C2 G 12741 -44.032 -97.814 -29.304 1.00 45.85 C
ATOM A16XS N2 G 12741 -43.169 -97.823 -28.275 1.00 50.70 N
ATOM A16XT N3 G 12741 -43.610 -97.488 -30.517 1.00 45.24 N
ATOM A16XU C4 G 12741 -44.603 -97.540 -31.429 1.00 44.93 C
ATOM A16XV H5' G 12741 -43.497 -96.025 -37.428 1.00 61.78 H
ATOM A16XW H5'' G 12741 -42.690 -97.551 -37.813 1.00 61.78 H
ATOM A16XX H4' G 12741 -41.726 -96.599 -35.934 1.00 65.26 H
ATOM A16XY H3' G 12741 -43.380 -99.089 -35.169 1.00 73.79 H
ATOM A16XZ H2' G 12741 -42.313 -98.804 -32.887 1.00 68.77 H
ATOM A16Y0 HO2' G 12741 -40.489 -97.897 -32.672 1.00 70.39 H
ATOM A16Y1 H1' G 12741 -42.809 -96.076 -32.809 1.00 62.92 H
ATOM A16Y2 H8 G 12741 -45.957 -97.284 -34.382 1.00 44.48 H
ATOM A16Y3 H1 G 12741 -45.541 -98.384 -28.058 1.00 39.26 H
ATOM A16Y4 H21 G 12741 -42.211 -97.579 -28.424 1.00 50.70 H
ATOM A16Y5 H22 G 12741 -43.485 -98.073 -27.360 1.00 50.70 H
ATOM A16Y6 P U 12742 -41.718-100.751 -36.048 1.00 71.24 P
ATOM A16Y7 OP1 U 12742 -43.094-100.890 -36.623 1.00 62.61 O
ATOM A16Y8 OP2 U 12742 -41.369-101.597 -34.878 1.00 78.49 O
ATOM A16Y9 O5' U 12742 -40.602-100.934 -37.175 1.00 63.53 O
ATOM A16YA C5' U 12742 -40.535-100.028 -38.292 1.00 64.95 C
ATOM A16YB C4' U 12742 -39.163-100.011 -38.937 1.00 70.84 C
ATOM A16YC O4' U 12742 -38.367 -98.917 -38.381 1.00 69.54 O
ATOM A16YD C3' U 12742 -38.296-101.259 -38.768 1.00 78.65 C
ATOM A16YE O3' U 12742 -37.554-101.406 -40.002 1.00 87.82 O
ATOM A16YF C2' U 12742 -37.514-100.883 -37.509 1.00 75.30 C
ATOM A16YG O2' U 12742 -36.331-101.531 -37.086 1.00 76.49 O
ATOM A16YH C1' U 12742 -37.170 -99.441 -37.839 1.00 71.31 C
ATOM A16YI N1 U 12742 -36.789 -98.678 -36.645 1.00 69.27 N
ATOM A16YJ C2 U 12742 -35.487 -98.218 -36.566 1.00 69.26 C
ATOM A16YK O2 U 12742 -34.670 -98.382 -37.456 1.00 74.54 O
ATOM A16YL N3 U 12742 -35.186 -97.539 -35.414 1.00 67.42 N
ATOM A16YM C4 U 12742 -36.022 -97.299 -34.344 1.00 67.06 C
ATOM A16YN O4 U 12742 -35.596 -96.676 -33.373 1.00 69.95 O
ATOM A16YO C5 U 12742 -37.346 -97.823 -34.493 1.00 65.79 C
ATOM A16YP C6 U 12742 -37.672 -98.490 -35.605 1.00 67.12 C
ATOM A16YQ H5' U 12742 -40.791 -99.013 -37.954 1.00 64.95 H
ATOM A16YR H5'' U 12742 -41.287-100.317 -39.041 1.00 64.95 H
ATOM A16YS H4' U 12742 -39.404 -99.918 -40.006 1.00 70.84 H
ATOM A16YT H3' U 12742 -38.765-102.244 -38.625 1.00 78.65 H
ATOM A16YU H2' U 12742 -38.149-101.165 -36.656 1.00 75.30 H
ATOM A16YV HO2' U 12742 -35.670-100.849 -36.774 1.00 76.49 H
ATOM A16YW H1' U 12742 -36.311 -99.379 -38.523 1.00 71.31 H
ATOM A16YX H3 U 12742 -34.257 -97.177 -35.341 1.00 67.42 H
ATOM A16YY H5 U 12742 -38.091 -97.678 -33.697 1.00 65.79 H
ATOM A16YZ H6 U 12742 -38.687 -98.905 -35.693 1.00 67.12 H
ATOM A16Z0 P G 12743 -36.933-102.844 -40.485 1.00 85.82 P
ATOM A16Z1 OP1 G 12743 -37.727-103.963 -39.869 1.00 70.60 O
ATOM A16Z2 OP2 G 12743 -35.459-102.773 -40.310 1.00 94.01 O
ATOM A16Z3 O5' G 12743 -37.039-102.838 -42.075 1.00 77.89 O
ATOM A16Z4 C5' G 12743 -37.934-101.979 -42.782 1.00 83.26 C
ATOM A16Z5 C4' G 12743 -39.233-102.696 -43.094 1.00 85.98 C
ATOM A16Z6 O4' G 12743 -39.405-103.897 -42.302 1.00 81.83 O
ATOM A16Z7 C3' G 12743 -40.493-101.875 -42.835 1.00 86.70 C
ATOM A16Z8 O3' G 12743 -41.165-101.581 -44.042 1.00 81.65 O
ATOM A16Z9 C2' G 12743 -41.368-102.757 -41.937 1.00 88.69 C
ATOM A16ZA O2' G 12743 -42.745-102.659 -42.262 1.00 91.30 O
ATOM A16ZB C1' G 12743 -40.784-104.142 -42.193 1.00 88.73 C
ATOM A16ZC N9 G 12743 -41.008-105.121 -41.136 1.00106.20 N
ATOM A16ZD C8 G 12743 -40.308-105.245 -39.959 1.00113.26 C
ATOM A16ZE N7 G 12743 -40.725-106.235 -39.216 1.00125.14 N
ATOM A16ZF C5 G 12743 -41.760-106.803 -39.948 1.00126.34 C
ATOM A16ZG C6 G 12743 -42.596-107.915 -39.652 1.00126.41 C
ATOM A16ZH O6 G 12743 -42.589-108.643 -38.652 1.00126.53 O
ATOM A16ZI N1 G 12743 -43.513-108.151 -40.672 1.00127.11 N
ATOM A16ZJ C2 G 12743 -43.612-107.419 -41.830 1.00128.07 C
ATOM A16ZK N2 G 12743 -44.559-107.808 -42.695 1.00137.95 N
ATOM A16ZL N3 G 12743 -42.842-106.380 -42.116 1.00123.41 N
ATOM A16ZM C4 G 12743 -41.945-106.130 -41.137 1.00119.98 C
ATOM A16ZN H5' G 12743 -37.463-101.640 -43.716 1.00 83.26 H
ATOM A16ZO H5'' G 12743 -38.140-101.081 -42.181 1.00 83.26 H
ATOM A16ZP H4' G 12743 -39.131-102.908 -44.169 1.00 85.98 H
ATOM A16ZQ H3' G 12743 -40.257-100.908 -42.367 1.00 86.70 H
ATOM A16ZR H2' G 12743 -41.349-102.472 -40.875 1.00 88.69 H
ATOM A16ZS HO2' G 12743 -42.849-102.572 -43.253 1.00 91.30 H
ATOM A16ZT H1' G 12743 -41.266-104.587 -43.076 1.00 88.73 H
ATOM A16ZU H8 G 12743 -39.481-104.578 -39.672 1.00113.26 H
ATOM A16ZV H1 G 12743 -44.149-108.913 -40.552 1.00127.11 H
ATOM A16ZW H21 G 12743 -44.682-107.316 -43.557 1.00137.95 H
ATOM A16ZX H22 G 12743 -45.143-108.590 -42.479 1.00137.95 H
ATOM A16ZY P G 12744 -41.873-100.187 -44.217 1.00 77.53 P
ATOM A16ZZ OP1 G 12744 -43.150-100.419 -44.959 1.00 76.41 O
ATOM A1700 OP2 G 12744 -40.834 -99.226 -44.697 1.00 69.56 O
ATOM A1701 O5' G 12744 -42.363 -99.794 -42.747 1.00 77.22 O
ATOM A1702 C5' G 12744 -41.468 -99.174 -41.796 1.00 72.50 C
ATOM A1703 C4' G 12744 -42.030 -97.908 -41.173 1.00 66.67 C
ATOM A1704 O4' G 12744 -41.255 -97.652 -39.971 1.00 60.54 O
ATOM A1705 C3' G 12744 -41.977 -96.627 -42.018 1.00 66.36 C
ATOM A1706 O3' G 12744 -43.280 -96.232 -42.497 1.00 66.18 O
ATOM A1707 C2' G 12744 -41.446 -95.578 -41.041 1.00 65.22 C
ATOM A1708 O2' G 12744 -42.472 -94.993 -40.268 1.00 73.86 O
ATOM A1709 C1' G 12744 -40.602 -96.411 -40.080 1.00 61.16 C
ATOM A170A N9 G 12744 -39.218 -96.619 -40.498 1.00 56.56 N
ATOM A170B C8 G 12744 -38.790 -97.155 -41.685 1.00 57.94 C
ATOM A170C N7 G 12744 -37.491 -97.186 -41.793 1.00 64.51 N
ATOM A170D C5 G 12744 -37.032 -96.619 -40.615 1.00 65.92 C
ATOM A170E C6 G 12744 -35.702 -96.367 -40.167 1.00 76.01 C
ATOM A170F O6 G 12744 -34.633 -96.606 -40.744 1.00 79.08 O
ATOM A170G N1 G 12744 -35.689 -95.772 -38.911 1.00 79.81 N
ATOM A170H C2 G 12744 -36.805 -95.450 -38.182 1.00 83.10 C
ATOM A170I N2 G 12744 -36.582 -94.877 -36.988 1.00 90.37 N
ATOM A170J N3 G 12744 -38.048 -95.673 -38.590 1.00 78.04 N
ATOM A170K C4 G 12744 -38.085 -96.257 -39.806 1.00 62.86 C
ATOM A170L H5' G 12744 -40.519 -98.936 -42.299 1.00 72.50 H
ATOM A170M H5'' G 12744 -41.237 -99.895 -40.998 1.00 72.50 H
ATOM A170N H4' G 12744 -43.101 -98.110 -41.021 1.00 66.67 H
ATOM A170O H3' G 12744 -41.358 -96.759 -42.918 1.00 66.36 H
ATOM A170P H2' G 12744 -40.929 -94.767 -41.575 1.00 65.22 H
ATOM A170Q HO2' G 12744 -43.356 -95.166 -40.702 1.00 73.86 H
ATOM A170R H1' G 12744 -40.523 -95.867 -39.127 1.00 61.16 H
ATOM A170S H8 G 12744 -39.472 -97.521 -42.466 1.00 57.94 H
ATOM A170T H1 G 12744 -34.798 -95.563 -38.508 1.00 79.81 H
ATOM A170U H21 G 12744 -37.353 -94.617 -36.406 1.00 90.37 H
ATOM A170V H22 G 12744 -35.645 -94.710 -36.681 1.00 90.37 H
ATOM A170W P A 12745 -43.460 -95.149 -43.724 1.00 62.11 P
ATOM A170X OP1 A 12745 -44.920 -94.919 -43.927 1.00 53.76 O
ATOM A170Y OP2 A 12745 -42.628 -95.597 -44.867 1.00 61.61 O
ATOM A170Z O5' A 12745 -42.700 -93.862 -43.175 1.00 62.20 O
ATOM A1710 C5' A 12745 -42.952 -92.532 -43.665 1.00 62.22 C
ATOM A1711 C4' A 12745 -42.394 -91.543 -42.666 1.00 65.66 C
ATOM A1712 O4' A 12745 -40.933 -91.614 -42.678 1.00 65.16 O
ATOM A1713 C3' A 12745 -42.758 -90.067 -42.880 1.00 66.15 C
ATOM A1714 O3' A 12745 -43.151 -89.401 -41.663 1.00 73.78 O
ATOM A1715 C2' A 12745 -41.451 -89.482 -43.416 1.00 62.14 C
ATOM A1716 O2' A 12745 -41.343 -88.097 -43.173 1.00 59.47 O
ATOM A1717 C1' A 12745 -40.419 -90.303 -42.640 1.00 60.47 C
ATOM A1718 N9 A 12745 -39.063 -90.306 -43.192 1.00 54.37 N
ATOM A1719 C8 A 12745 -38.695 -90.431 -44.506 1.00 54.23 C
ATOM A171A N7 A 12745 -37.401 -90.364 -44.701 1.00 55.02 N
ATOM A171B C5 A 12745 -36.881 -90.177 -43.429 1.00 55.56 C
ATOM A171C C6 A 12745 -35.563 -90.034 -42.955 1.00 61.10 C
ATOM A171D N6 A 12745 -34.487 -90.070 -43.740 1.00 74.35 N
ATOM A171E N1 A 12745 -35.384 -89.863 -41.628 1.00 56.08 N
ATOM A171F C2 A 12745 -36.464 -89.833 -40.840 1.00 62.80 C
ATOM A171G N3 A 12745 -37.752 -89.966 -41.165 1.00 62.00 N
ATOM A171H C4 A 12745 -37.893 -90.139 -42.490 1.00 54.96 C
ATOM A171I H5' A 12745 -44.032 -92.372 -43.800 1.00 62.22 H
ATOM A171J H5'' A 12745 -42.480 -92.390 -44.649 1.00 62.22 H
ATOM A171K H4' A 12745 -42.856 -91.848 -41.715 1.00 65.66 H
ATOM A171L H3' A 12745 -43.623 -89.944 -43.548 1.00 66.15 H
ATOM A171M H2' A 12745 -41.341 -89.549 -44.508 1.00 62.14 H
ATOM A171N HO2' A 12745 -41.950 -87.842 -42.420 1.00 59.47 H
ATOM A171O H1' A 12745 -40.295 -89.867 -41.638 1.00 60.47 H
ATOM A171P H8 A 12745 -39.419 -90.574 -45.322 1.00 54.23 H
ATOM A171Q H61 A 12745 -33.575 -89.962 -43.344 1.00 74.35 H
ATOM A171R H62 A 12745 -34.591 -90.205 -44.725 1.00 74.35 H
ATOM A171S H2 A 12745 -36.262 -89.676 -39.770 1.00 62.80 H
ATOM A171T P U 12746 -44.723 -89.225 -41.254 1.00 76.62 P
ATOM A171U OP1 U 12746 -45.373 -90.570 -41.314 1.00 74.91 O
ATOM A171V OP2 U 12746 -45.273 -88.097 -42.053 1.00 76.43 O
ATOM A171W O5' U 12746 -44.680 -88.779 -39.716 1.00 65.33 O
ATOM A171X C5' U 12746 -45.671 -89.251 -38.765 1.00 62.70 C
ATOM A171Y C4' U 12746 -45.326 -88.880 -37.331 1.00 64.60 C
ATOM A171Z O4' U 12746 -44.743 -90.029 -36.653 1.00 71.68 O
ATOM A1720 C3' U 12746 -44.339 -87.738 -37.117 1.00 65.19 C
ATOM A1721 O3' U 12746 -44.996 -86.503 -36.910 1.00 66.58 O
ATOM A1722 C2' U 12746 -43.668 -88.100 -35.797 1.00 66.48 C
ATOM A1723 O2' U 12746 -44.313 -87.551 -34.668 1.00 66.75 O
ATOM A1724 C1' U 12746 -43.616 -89.624 -35.888 1.00 71.64 C
ATOM A1725 N1 U 12746 -42.387 -90.075 -36.563 1.00 74.41 N
ATOM A1726 C2 U 12746 -41.236 -90.128 -35.804 1.00 70.12 C
ATOM A1727 O2 U 12746 -41.218 -89.873 -34.615 1.00 70.37 O
ATOM A1728 N3 U 12746 -40.110 -90.506 -36.490 1.00 70.05 N
ATOM A1729 C4 U 12746 -40.010 -90.805 -37.830 1.00 72.27 C
ATOM A172A O4 U 12746 -38.922 -91.145 -38.294 1.00 73.02 O
ATOM A172B C5 U 12746 -41.240 -90.715 -38.552 1.00 75.18 C
ATOM A172C C6 U 12746 -42.357 -90.350 -37.913 1.00 78.16 C
ATOM A172D H5' U 12746 -45.760 -90.344 -38.846 1.00 62.70 H
ATOM A172E H5'' U 12746 -46.653 -88.828 -39.024 1.00 62.70 H
ATOM A172F H4' U 12746 -46.295 -88.545 -36.933 1.00 64.60 H
ATOM A172G H3' U 12746 -43.671 -87.625 -37.984 1.00 65.19 H
ATOM A172H H2' U 12746 -42.666 -87.669 -35.651 1.00 66.48 H
ATOM A172I HO2' U 12746 -43.747 -86.824 -34.281 1.00 66.75 H
ATOM A172J H1' U 12746 -43.624 -90.062 -34.879 1.00 71.64 H
ATOM A172K H3 U 12746 -39.267 -90.572 -35.957 1.00 70.05 H
ATOM A172L H5 U 12746 -41.268 -90.945 -39.627 1.00 75.18 H
ATOM A172M H6 U 12746 -43.290 -90.266 -38.489 1.00 78.16 H
ATOM A187A P A 12792 -29.707 -92.279 -31.117 1.00 73.58 P
ATOM A187B OP1 A 12792 -28.880 -92.908 -30.033 1.00 66.02 O
ATOM A187C OP2 A 12792 -29.872 -92.969 -32.423 1.00 76.16 O
ATOM A187D O5' A 12792 -31.207 -92.042 -30.644 1.00 70.47 O
ATOM A187E C5' A 12792 -31.554 -91.380 -29.415 1.00 66.33 C
ATOM A187F C4' A 12792 -33.029 -91.059 -29.439 1.00 62.89 C
ATOM A187G O4' A 12792 -33.330 -90.221 -30.588 1.00 64.37 O
ATOM A187H C3' A 12792 -33.935 -92.264 -29.639 1.00 59.63 C
ATOM A187I O3' A 12792 -34.193 -92.928 -28.420 1.00 56.45 O
ATOM A187J C2' A 12792 -35.205 -91.637 -30.197 1.00 60.33 C
ATOM A187K O2' A 12792 -36.011 -91.192 -29.141 1.00 64.51 O
ATOM A187L C1' A 12792 -34.664 -90.459 -31.010 1.00 63.70 C
ATOM A187M N9 A 12792 -34.680 -90.717 -32.453 1.00 67.77 N
ATOM A187N C8 A 12792 -33.618 -90.893 -33.308 1.00 67.94 C
ATOM A187O N7 A 12792 -33.972 -91.124 -34.550 1.00 66.07 N
ATOM A187P C5 A 12792 -35.358 -91.106 -34.510 1.00 65.20 C
ATOM A187Q C6 A 12792 -36.331 -91.294 -35.502 1.00 64.43 C
ATOM A187R N6 A 12792 -36.045 -91.546 -36.780 1.00 64.30 N
ATOM A187S N1 A 12792 -37.628 -91.218 -35.131 1.00 66.02 N
ATOM A187T C2 A 12792 -37.914 -90.968 -33.845 1.00 66.20 C
ATOM A187U N3 A 12792 -37.087 -90.787 -32.819 1.00 65.16 N
ATOM A187V C4 A 12792 -35.808 -90.867 -33.223 1.00 67.35 C
ATOM A187W H5' A 12792 -30.965 -90.458 -29.299 1.00 66.33 H
ATOM A187X H5'' A 12792 -31.318 -92.024 -28.555 1.00 66.33 H
ATOM A187Y H4' A 12792 -33.217 -90.596 -28.459 1.00 62.89 H
ATOM A187Z H3' A 12792 -33.495 -93.030 -30.295 1.00 59.63 H
ATOM A1880 H2' A 12792 -35.826 -92.322 -30.794 1.00 60.33 H
ATOM A1881 HO2' A 12792 -35.675 -91.575 -28.280 1.00 64.51 H
ATOM A1882 H1' A 12792 -35.310 -89.586 -30.835 1.00 63.70 H
ATOM A1883 H8 A 12792 -32.569 -90.845 -32.981 1.00 67.94 H
ATOM A1884 H61 A 12792 -36.784 -91.671 -37.442 1.00 64.30 H
ATOM A1885 H62 A 12792 -35.092 -91.610 -37.076 1.00 64.30 H
ATOM A1886 H2 A 12792 -38.985 -90.903 -33.604 1.00 66.20 H
ATOM A1887 P A 12793 -34.948 -94.345 -28.435 1.00 64.15 P
ATOM A1888 OP1 A 12793 -35.571 -94.575 -27.099 1.00 70.89 O
ATOM A1889 OP2 A 12793 -34.015 -95.363 -28.985 1.00 68.18 O
ATOM A188A O5' A 12793 -36.132 -94.140 -29.482 1.00 55.24 O
ATOM A188B C5' A 12793 -36.819 -95.293 -29.973 1.00 50.60 C
ATOM A188C C4' A 12793 -38.293 -95.052 -29.949 1.00 48.30 C
ATOM A188D O4' A 12793 -38.574 -93.940 -30.826 1.00 47.54 O
ATOM A188E C3' A 12793 -39.145 -96.187 -30.497 1.00 50.62 C
ATOM A188F O3' A 12793 -39.343 -97.210 -29.523 1.00 58.63 O
ATOM A188G C2' A 12793 -40.414 -95.451 -30.914 1.00 48.90 C
ATOM A188H O2' A 12793 -41.331 -95.264 -29.857 1.00 42.51 O
ATOM A188I C1' A 12793 -39.847 -94.122 -31.427 1.00 51.07 C
ATOM A188J N9 A 12793 -39.682 -94.035 -32.882 1.00 56.45 N
ATOM A188K C8 A 12793 -38.501 -94.044 -33.583 1.00 58.00 C
ATOM A188L N7 A 12793 -38.655 -93.922 -34.880 1.00 58.33 N
ATOM A188M C5 A 12793 -40.030 -93.829 -35.046 1.00 61.82 C
ATOM A188N C6 A 12793 -40.839 -93.677 -36.190 1.00 66.50 C
ATOM A188O N6 A 12793 -40.361 -93.604 -37.432 1.00 69.04 N
ATOM A188P N1 A 12793 -42.174 -93.594 -36.009 1.00 66.53 N
ATOM A188Q C2 A 12793 -42.655 -93.655 -34.762 1.00 66.23 C
ATOM A188R N3 A 12793 -41.999 -93.804 -33.610 1.00 63.66 N
ATOM A188S C4 A 12793 -40.675 -93.889 -33.824 1.00 59.74 C
ATOM A188T H5' A 12793 -36.571 -96.170 -29.357 1.00 50.60 H
ATOM A188U H5'' A 12793 -36.491 -95.518 -30.999 1.00 50.60 H
ATOM A188V H4' A 12793 -38.543 -94.904 -28.888 1.00 48.30 H
ATOM A188W H3' A 12793 -38.698 -96.743 -31.334 1.00 50.62 H
ATOM A188X H2' A 12793 -41.008 -96.007 -31.654 1.00 48.90 H
ATOM A188Y HO2' A 12793 -42.091 -95.906 -29.957 1.00 42.51 H
ATOM A188Z H1' A 12793 -40.578 -93.345 -31.159 1.00 51.07 H
ATOM A1890 H8 A 12793 -37.517 -94.144 -33.101 1.00 58.00 H
ATOM A1891 H61 A 12793 -40.988 -93.496 -38.204 1.00 69.04 H
ATOM A1892 H62 A 12793 -39.375 -93.657 -37.592 1.00 69.04 H
ATOM A1893 H2 A 12793 -43.748 -93.570 -34.674 1.00 66.23 H
ATOM A1894 P U 12794 -39.615 -98.738 -29.985 1.00 68.40 P
ATOM A1895 OP1 U 12794 -40.121 -98.711 -31.382 1.00 69.25 O
ATOM A1896 OP2 U 12794 -40.433 -99.412 -28.929 1.00 63.79 O
ATOM A1897 O5' U 12794 -38.160 -99.404 -29.979 1.00 74.42 O
ATOM A1898 C5' U 12794 -37.084 -98.954 -30.845 1.00 78.39 C
ATOM A1899 C4' U 12794 -35.778 -99.693 -30.574 1.00 83.85 C
ATOM A189A O4' U 12794 -35.068 -99.105 -29.440 1.00 91.73 O
ATOM A189B C3' U 12794 -35.872-101.173 -30.228 1.00 83.38 C
ATOM A189C O3' U 12794 -35.952-101.996 -31.378 1.00 78.21 O
ATOM A189D C2' U 12794 -34.546-101.415 -29.521 1.00 88.98 C
ATOM A189E O2' U 12794 -33.451-101.578 -30.393 1.00104.63 O
ATOM A189F C1' U 12794 -34.396-100.128 -28.712 1.00 91.56 C
ATOM A189G N1 U 12794 -34.990-100.265 -27.369 1.00 88.22 N
ATOM A189H C2 U 12794 -34.223-100.882 -26.402 1.00 80.74 C
ATOM A189I O2 U 12794 -33.090-101.272 -26.608 1.00 90.96 O
ATOM A189J N3 U 12794 -34.831-101.018 -25.181 1.00 74.68 N
ATOM A189K C4 U 12794 -36.102-100.624 -24.835 1.00 79.80 C
ATOM A189L O4 U 12794 -36.506-100.818 -23.690 1.00 84.46 O
ATOM A189M C5 U 12794 -36.843-100.014 -25.894 1.00 85.45 C
ATOM A189N C6 U 12794 -36.280 -99.871 -27.099 1.00 90.37 C
ATOM A189O H5' U 12794 -36.929 -97.874 -30.703 1.00 78.39 H
ATOM A189P H5'' U 12794 -37.375 -99.101 -31.895 1.00 78.39 H
ATOM A189Q H4' U 12794 -35.270 -99.593 -31.544 1.00 83.85 H
ATOM A189R H3' U 12794 -36.770-101.411 -29.639 1.00 83.38 H
ATOM A189S H2' U 12794 -34.550-102.348 -28.938 1.00 88.98 H
ATOM A189T HO2' U 12794 -33.778-101.888 -31.286 1.00104.63 H
ATOM A189U H1' U 12794 -33.331 -99.890 -28.569 1.00 91.56 H
ATOM A189V H3 U 12794 -34.289-101.452 -24.461 1.00 74.68 H
ATOM A189W H5 U 12794 -37.871 -99.664 -25.719 1.00 85.45 H
ATOM A189X H6 U 12794 -36.873 -99.419 -27.908 1.00 90.37 H
ATOM A189Y P C 12795 -36.895-103.272 -31.378 1.00 81.10 P
ATOM A189Z OP1 C 12795 -36.545-104.063 -32.579 1.00 88.21 O
ATOM A18A0 OP2 C 12795 -38.295-102.815 -31.212 1.00 88.08 O
ATOM A18A1 O5' C 12795 -36.485-104.023 -30.031 1.00 79.83 O
ATOM A18A2 C5' C 12795 -35.241-104.738 -29.952 1.00 81.49 C
ATOM A18A3 C4' C 12795 -34.954-105.228 -28.550 1.00 80.20 C
ATOM A18A4 O4' C 12795 -34.930-104.120 -27.600 1.00 83.31 O
ATOM A18A5 C3' C 12795 -35.949-106.194 -27.924 1.00 79.76 C
ATOM A18A6 O3' C 12795 -35.947-107.540 -28.397 1.00 82.96 O
ATOM A18A7 C2' C 12795 -35.521-106.098 -26.469 1.00 83.74 C
ATOM A18A8 O2' C 12795 -34.290-106.737 -26.208 1.00 81.55 O
ATOM A18A9 C1' C 12795 -35.374-104.581 -26.322 1.00 87.95 C
ATOM A18AA N1 C 12795 -36.669-103.943 -25.985 1.00 89.22 N
ATOM A18AB C2 C 12795 -37.212-104.147 -24.708 1.00 80.95 C
ATOM A18AC O2 C 12795 -36.569-104.804 -23.878 1.00 80.37 O
ATOM A18AD N3 C 12795 -38.412-103.609 -24.407 1.00 80.17 N
ATOM A18AE C4 C 12795 -39.080-102.913 -25.328 1.00 89.59 C
ATOM A18AF N4 C 12795 -40.259-102.398 -24.985 1.00103.13 N
ATOM A18AG C5 C 12795 -38.560-102.701 -26.639 1.00 86.53 C
ATOM A18AH C6 C 12795 -37.367-103.234 -26.924 1.00 90.80 C
ATOM A18AI H5' C 12795 -34.422-104.084 -30.285 1.00 81.49 H
ATOM A18AJ H5'' C 12795 -35.268-105.596 -30.640 1.00 81.49 H
ATOM A18AK H4' C 12795 -33.997-105.747 -28.707 1.00 80.20 H
ATOM A18AL H3' C 12795 -36.988-105.922 -28.162 1.00 79.76 H
ATOM A18AM H2' C 12795 -36.224-106.584 -25.776 1.00 83.74 H
ATOM A18AN HO2' C 12795 -34.131-107.448 -26.893 1.00 81.55 H
ATOM A18AO H1' C 12795 -34.674-104.328 -25.512 1.00 87.95 H
ATOM A18AP H41 C 12795 -40.787-101.870 -25.651 1.00103.13 H
ATOM A18AQ H42 C 12795 -40.617-102.539 -24.062 1.00103.13 H
ATOM A18AR H5 C 12795 -39.119-102.121 -27.388 1.00 86.53 H
ATOM A18AS H6 C 12795 -36.940-103.100 -27.929 1.00 90.80 H
ATOM A18AT P G 12796 -37.278-108.456 -28.265 1.00 94.45 P
ATOM A18AU OP1 G 12796 -36.973-109.808 -28.776 1.00101.84 O
ATOM A18AV OP2 G 12796 -38.421-107.711 -28.861 1.00 94.56 O
ATOM A18AW O5' G 12796 -37.422-108.662 -26.691 1.00 92.08 O
ATOM A18AX C5' G 12796 -38.685-109.012 -26.096 1.00 90.96 C
ATOM A18AY C4' G 12796 -38.829-108.344 -24.748 1.00 90.81 C
ATOM A18AZ O4' G 12796 -38.786-106.886 -24.879 1.00 93.52 O
ATOM A18B0 C3' G 12796 -40.144-108.615 -24.046 1.00 88.62 C
ATOM A18B1 O3' G 12796 -40.131-109.867 -23.390 1.00 83.73 O
ATOM A18B2 C2' G 12796 -40.245-107.418 -23.118 1.00 93.52 C
ATOM A18B3 O2' G 12796 -39.408-107.588 -21.991 1.00 88.14 O
ATOM A18B4 C1' G 12796 -39.789-106.298 -24.057 1.00 95.19 C
ATOM A18B5 N9 G 12796 -40.842-105.753 -24.922 1.00 97.06 N
ATOM A18B6 C8 G 12796 -40.847-105.731 -26.296 1.00 94.05 C
ATOM A18B7 N7 G 12796 -41.923-105.187 -26.798 1.00 91.50 N
ATOM A18B8 C5 G 12796 -42.672-104.818 -25.691 1.00 91.27 C
ATOM A18B9 C6 G 12796 -43.934-104.172 -25.608 1.00 89.78 C
ATOM A18BA O6 G 12796 -44.667-103.789 -26.528 1.00 77.76 O
ATOM A18BB N1 G 12796 -44.327-103.986 -24.287 1.00 95.70 N
ATOM A18BC C2 G 12796 -43.601-104.372 -23.184 1.00 93.36 C
ATOM A18BD N2 G 12796 -44.152-104.112 -21.988 1.00 91.72 N
ATOM A18BE N3 G 12796 -42.419-104.964 -23.248 1.00 94.84 N
ATOM A18BF C4 G 12796 -42.019-105.157 -24.523 1.00 96.26 C
ATOM A18BG H5' G 12796 -38.756-110.104 -25.982 1.00 90.96 H
ATOM A18BH H5'' G 12796 -39.509-108.703 -26.757 1.00 90.96 H
ATOM A18BI H4' G 12796 -37.995-108.764 -24.167 1.00 90.81 H
ATOM A18BJ H3' G 12796 -41.019-108.703 -24.707 1.00 88.62 H
ATOM A18BK H2' G 12796 -41.235-107.234 -22.675 1.00 93.52 H
ATOM A18BL HO2' G 12796 -38.640-106.950 -22.046 1.00 88.14 H
ATOM A18BM H1' G 12796 -39.447-105.448 -23.448 1.00 95.19 H
ATOM A18BN H8 G 12796 -40.027-106.131 -26.911 1.00 94.05 H
ATOM A18BO H1 G 12796 -45.206-103.537 -24.126 1.00 95.70 H
ATOM A18BP H21 G 12796 -43.672-104.369 -21.150 1.00 91.72 H
ATOM A18BQ H22 G 12796 -45.043-103.661 -21.935 1.00 91.72 H
TER

ADD REPLY

Login before adding your answer.

Traffic: 1056 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6