calcroicovg problem genome

Question

[qwertyuiop201320142015]

When I get in the cal-roi-covg and use the command--make. It has a problem in the list;

gcc -g -Wall -O2 -I/home/xuhb/xuhb/calc-roi-covg/samtools calcRoiCovg.c -o calcRoiCovg -L/home/xuhb/xuhb/calc-roi-covg/samtools -lbam -lm -lz -pthread
In file included from calcRoiCovg.c:12:
/home/xuhb/xuhb/calc-roi-covg/samtools/sam.h:28:24: error: htslib/sam.h: 没有那个文件或目录
In file included from /home/xuhb/xuhb/calc-roi-covg/samtools/sam.h:29,
                 from calcRoiCovg.c:12:
/home/xuhb/xuhb/calc-roi-covg/samtools/bam.h:48:25: error: htslib/bgzf.h: 没有那个文件或目录

Any help will be appreciate! Thank you!

Answer 1

[Cyriac Kandoth]

Please refer to the build instructions at Installation of the MuSiC suite on unsupported Linux distributions. From your error message, you are likely missing the zlib1g-dev (aka zlib-devel) library.

[qwertyuiop201320142015]

Thanks for you answer!But I have installed the zlib1g-dev and it is the lastest version.I install the MuSiC in the Ubuntu 10.04.I really don't konw what happened!

[qwertyuiop201320142015]

Hello thank you for helping me! I have a question. Where are you finding the calroicovg.c source code of cal-covg. I eager to know it. Thank you very much.

[Cyriac Kandoth]

https://github.com/ding-lab/calc-roi-covg/blob/master/calcRoiCovg.c

[qwertyuiop201320142015]

Yeah, it's very useful for me.Can I get the source code of cal-bmr? Where can I find it? Thank you. And where can I get the source code of the genome MuSic? Thank you again.

[Cyriac Kandoth]

https://github.com/genome/genome/blob/master/lib/perl/Genome/Model/Tools/Music/Bmr/CalcBmr.pm

[qwertyuiop201320142015]

Hello thank you for helping me! I have a question. Where are you finding the calroicovg.c source code of cal-covg. I'm eager to know it. Thank you very much.