conversion of protein identifiers
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9.5 years ago
RT!37 ▴ 20

After performing psi-blast of query sequence (Uniprot accession), I got some hits as follows:

gi|148833513|ref|NP_001092104.1|
gi|219521533|gb|AAI43943.1|
gi|160017954|sp|Q5R5P4.2|RBM47_PONAB

How to convert all these different identifiers uniformly as Uniprot accession.

I tried Retrieve/Id Mapping tool from uniprot but no results found!

Thanks in advance

sequence • 1.6k views
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Entering edit mode
9.5 years ago
Brice Sarver ★ 3.8k
  1. Perform string splitting using your language of choice to extract the ID you want.
  2. Use BioMart.
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But if I am using gi identifier in Biomart, which Input external references (dropdown menu in convert section) should be used?

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