Entering edit mode
9.5 years ago
dineshtripathy9658
▴
10
ok, so here i have a pipeline and i have filtered out the lincrna from 454 seq data for a rice cultivar under three conditions. i was going through some paper and i found repeat masker was used to find out repeat containing TUs. why should be the repeat containing transcripts be removed? does it matter, should i remove those containing any of those from the repeat masker output including the simple repeats, satellites also?
