Entering edit mode
9.6 years ago
Michel Edwar
▴
80
I am drawing a phylogenetic tree. To select the most appropriate model, I ran ProtTest with the aligned amino acid sequences. The ProtTest suggested that the best models for the two LG+I+G+F. However, When I try to build the trees using PhyML, I do not know how to set the parameters to fit to the suggested models. The option -m
(or --model
) can accept LG. But, which options can accept G , I and F in the suggested models?