Question

How To Identify Targets of A Transcription Factor for Bos Taurus?

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9.5 years ago

rodbari.zahra • 0

I have a list of transcription factors from a high-throughput experiment for Cow. I would like to know about the probable target genes of these transcription factors.

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ADD COMMENT • link updated 9.5 years ago by andrew.j.skelton73 6.6k • written 9.5 years ago by rodbari.zahra • 0

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What kind of experiment? RNA Seq? ChIP Seq?

ADD REPLY • link 9.5 years ago by andrew.j.skelton73 6.6k

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Or more generally, do you currently have experimental data or are you looking to make a prediction from motifs?

ADD REPLY • link 9.5 years ago by Jautis ▴ 580

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I have Expression Data(Micro array). I want interaction between TF and target gene database in Bos tauruse

ADD REPLY • link 9.5 years ago by rodbari.zahra • 0

Ram · Answer 1 · 2015-06-15

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9.5 years ago

andrew.j.skelton73 6.6k

I'd say your best bet is to look here, and look for binding sites based on your probe sequences. http://www.bioconductor.org/help/workflows/gene-regulation-tfbs/

ADD COMMENT • link updated 5.1 years ago by Ram 44k • written 9.5 years ago by andrew.j.skelton73 6.6k

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I have Agilent ID, then convered to Ensemble ID for Another analysis.I need to one file with Esemble ID,TF, Target gene. with this way I can get this result?

ADD REPLY • link updated 5.1 years ago by Ram 44k • written 9.5 years ago by rodbari.zahra • 0