NaS (Nanopore Synthetic-long) help

Question

[midox]

Hello,

I am trying to set up the program is NaS hybrid approach Developed to take advantage of data generated using Minion device.

I started to install the PRE-REQUISITES but the last two points seems a little fuzzy.

• Blat binary (at least v35) available through your PATH variable environment.
• Last binary (at least 502) accessed through your PATH variable environment.

Do you have an idea how to do?

Thank you.

Answer 1

[george.ry]

• LAST: http://last.cbrc.jp/
• BLAT: http://hgdownload.soe.ucsc.edu/admin/exe/

Download both and then add the directories to your PATH - probably easiest set in your bashrc file (http://unix.stackexchange.com/questions/26047/how-to-correctly-add-a-path-to-path) - or add a link to the binaries themselves into /usr/local/bin/.