Network analysis of a set of proteins

Question

[abhijitperingode]

Hey,

I have a list of proteins and I want to check whether they belong to a common protein assembly or not. What are the available tools for this purpose?

Answer 1

[roy.granit]

Hi, you can try one of these tools:

• http://string-db.org/
• http://www.genemania.org/
• http://david.abcc.ncifcrf.gov/
• http://bioinfo.vanderbilt.edu/webgestalt/

Good luck

[abhijitperingode]

Thanks.

May I know about Protein Interaction Network Analysis(PINA 2)?

[roy.granit]

Not sure what you mean, can you rephrase?

[abhijitperingode]

Sorry for that. There is one more tool named PINA (Protein Interaction Network Analysis) and I was asking whether you can provide more information about that.

[roy.granit]

Are referring to this one? anyway. I am not familiar with it so cannot advise you on that, sorry :/ maybe you should post a new question, asking for help with that specific tool.

[abhijitperingode]

Of course. Thanks for your kind replies