Entering edit mode
9.8 years ago
Istvan Albert
102k
I was working on a material that I put together as an example of studying the Ebola data and strangely code that ran fine in the Fall now did not produce any results. Quite the head scratcher ...
I ended up troubleshooting it for a while only to realize that most of the new data deposited into the main Ebola project does not actually map to Ebola. At all. In fact 541 files map at rates below 1%!
Below is the code used to evaluate the mapping percentages for all data (891 files) in this project, see the results at the end). Hopefully it might save some time to someone else.
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| # | |
| # What are the mapping percentages for the ebola data in | |
| # the Zaire ebolavirus sample sequencing from the 2014 outbreak | |
| # in Sierra Leone, West Africa | |
| # | |
| # http://www.ncbi.nlm.nih.gov/bioproject/PRJNA257197/ | |
| # Get the run info that corresponds to this project. | |
| # Get all the runs for this project. | |
| esearch -db sra -query PRJNA257197 | efetch -format runinfo > runinfo.csv | |
| # | |
| # The file seems to have the right information but it also contains a few | |
| # error messages (why?, it is bioinformatics that's why). | |
| # Alternatively you can download the runinfo manually from: | |
| # | |
| # http://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=257197 | |
| # | |
| # by selecting sendto file and runinfo. | |
| # | |
| # | |
| # Now select the run ids only. | |
| # | |
| cat runinfo.csv | cut -f 1 -d ',' | grep SRR > sraids.txt | |
| # | |
| # Let's put the original data and alignment files into different folders. | |
| # There is going to be a lots of them, 891 in fact. | |
| # | |
| mkdir -p sra bam ref | |
| # | |
| # Lets get all the data now. 20K reads from each data. | |
| # This will generate 1782 files. | |
| # | |
| cat sraids.txt | parallel --verbose 'fastq-dump -X 20000 --split-files -O sra {}' | |
| # Get the ebola genome build from 1976. | |
| efetch -db nucleotide -id NC_002549 -format fasta > ref/ebola-1976.fa | |
| # Index the genome with bwa. | |
| bwa index ref/ebola-1976.fa | |
| # | |
| # Run the alignment for each sample and produce a report on the | |
| # alignment percentages. | |
| # | |
| REF=ref/ebola-1976.fa | |
| # Run the alignment on each of the files. | |
| cat sraids.txt | parallel --verbose "bwa mem $REF sra/{}_1.fastq sra/{}_2.fastq 2>> logfile.txt | samtools view -b - | samtools sort -o - tmp > bam/{}.bam" | |
| # Index each bam files so that we can run statistics | |
| cat sraids.txt | parallel --verbose 'samtools index bam/{}.bam' | |
| # | |
| # Let's compute the mapping statistics now. | |
| # | |
| rm -rf stats.txt | |
| for name in bam/*.bam | |
| do | |
| # The line that indicates properly mapping reads. | |
| line=`samtools flagstat $name | grep proper` | |
| # Extract mapping percentage | |
| value=`echo $line | cut -f 2 -d '(' | cut -f 1 -d '%'` | |
| echo "$value $name $line" >> stats.txt | |
| done | |
| # | |
| # Sort the statistics by the mapping percentage of the files. | |
| # | |
| sort stats.txt -rn | head | |
| ############## RESULTS ################# | |
| The code above produces the following: | |
| 98.83 bam/SRR1553425.bam 39534 + 0 properly paired (98.83%:nan%) | |
| 98.48 bam/SRR1553499.bam 39392 + 0 properly paired (98.48%:nan%) | |
| 98.40 bam/SRR1553479.bam 39358 + 0 properly paired (98.40%:nan%) | |
| 98.12 bam/SRR1553480.bam 39248 + 0 properly paired (98.12%:nan%) | |
| 98.08 bam/SRR1553487.bam 39234 + 0 properly paired (98.08%:nan%) | |
| 97.82 bam/SRR1553500.bam 39128 + 0 properly paired (97.82%:nan%) | |
| 97.82 bam/SRR1553486.bam 39128 + 0 properly paired (97.82%:nan%) | |
| 97.04 bam/SRR1553599.bam 38816 + 0 properly paired (97.04%:nan%) | |
| 96.99 bam/SRR1553488.bam 38794 + 0 properly paired (96.99%:nan%) | |
| 96.89 bam/SRR1553426.bam 38754 + 0 properly paired (96.89%:nan%) | |
| 96.83 bam/SRR1553485.bam 38734 + 0 properly paired (96.83%:nan%) | |
| 96.29 bam/SRR1553467.bam 38518 + 0 properly paired (96.29%:nan%) | |
| 95.97 bam/SRR1553429.bam 38388 + 0 properly paired (95.97%:nan%) | |
| 95.92 bam/SRR1553481.bam 38370 + 0 properly paired (95.92%:nan%) | |
| 95.63 bam/SRR1553513.bam 38252 + 0 properly paired (95.63%:nan%) | |
| 94.83 bam/SRR1553473.bam 37932 + 0 properly paired (94.83%:nan%) | |
| 94.81 bam/SRR1553477.bam 37926 + 0 properly paired (94.81%:nan%) | |
| 93.97 bam/SRR1553600.bam 37588 + 0 properly paired (93.97%:nan%) | |
| 93.29 bam/SRR1553430.bam 37314 + 0 properly paired (93.29%:nan%) | |
| 93.22 bam/SRR1553482.bam 37286 + 0 properly paired (93.22%:nan%) | |
| 92.38 bam/SRR1553579.bam 36952 + 0 properly paired (92.38%:nan%) | |
| 92.33 bam/SRR1553474.bam 36930 + 0 properly paired (92.33%:nan%) | |
| 92.27 bam/SRR1553439.bam 36908 + 0 properly paired (92.27%:nan%) | |
| 92.23 bam/SRR1553497.bam 36894 + 0 properly paired (92.23%:nan%) | |
| 92.15 bam/SRR1613380.bam 20624 + 0 properly paired (92.15%:nan%) | |
| 91.79 bam/SRR1553589.bam 36718 + 0 properly paired (91.79%:nan%) | |
| 90.30 bam/SRR1613384.bam 36120 + 0 properly paired (90.30%:nan%) | |
| 90.20 bam/SRR1553509.bam 36080 + 0 properly paired (90.20%:nan%) | |
| 90.14 bam/SRR1613378.bam 13058 + 0 properly paired (90.14%:nan%) | |
| 89.26 bam/SRR1553478.bam 35704 + 0 properly paired (89.26%:nan%) | |
| 88.95 bam/SRR1613377.bam 11732 + 0 properly paired (88.95%:nan%) | |
| 88.82 bam/SRR1972731.bam 35530 + 0 properly paired (88.82%:nan%) | |
| 88.70 bam/SRR1553567.bam 35478 + 0 properly paired (88.70%:nan%) | |
| 88.54 bam/SRR1553514.bam 35416 + 0 properly paired (88.54%:nan%) | |
| 88.52 bam/SRR1613379.bam 10226 + 0 properly paired (88.52%:nan%) | |
| 88.30 bam/SRR1553568.bam 35320 + 0 properly paired (88.30%:nan%) | |
| 88.29 bam/SRR1613383.bam 35316 + 0 properly paired (88.29%:nan%) | |
| 87.87 bam/SRR1972784.bam 35146 + 0 properly paired (87.87%:nan%) | |
| 87.78 bam/SRR1553580.bam 35112 + 0 properly paired (87.78%:nan%) | |
| 87.58 bam/SRR1553593.bam 35030 + 0 properly paired (87.58%:nan%) | |
| 87.33 bam/SRR1553591.bam 34930 + 0 properly paired (87.33%:nan%) | |
| 86.54 bam/SRR1553517.bam 34616 + 0 properly paired (86.54%:nan%) | |
| 86.19 bam/SRR1735143.bam 34478 + 0 properly paired (86.19%:nan%) | |
| 85.92 bam/SRR1553475.bam 34368 + 0 properly paired (85.92%:nan%) | |
| 85.83 bam/SRR1613382.bam 34332 + 0 properly paired (85.83%:nan%) | |
| 85.35 bam/SRR1972741.bam 34140 + 0 properly paired (85.35%:nan%) | |
| 84.92 bam/SRR1553590.bam 33968 + 0 properly paired (84.92%:nan%) | |
| 84.74 bam/SRR1972792.bam 33894 + 0 properly paired (84.74%:nan%) | |
| 84.63 bam/SRR1553440.bam 33852 + 0 properly paired (84.63%:nan%) | |
| 84.11 bam/SRR1972735.bam 33644 + 0 properly paired (84.11%:nan%) | |
| 84.05 bam/SRR1553571.bam 33620 + 0 properly paired (84.05%:nan%) | |
| 83.15 bam/SRR1553476.bam 33260 + 0 properly paired (83.15%:nan%) | |
| 83.03 bam/SRR1553572.bam 33212 + 0 properly paired (83.03%:nan%) | |
| 82.09 bam/SRR1972774.bam 32838 + 0 properly paired (82.09%:nan%) | |
| 81.64 bam/SRR1553565.bam 32656 + 0 properly paired (81.64%:nan%) | |
| 81.15 bam/SRR1553511.bam 32458 + 0 properly paired (81.15%:nan%) | |
| 80.38 bam/SRR1553585.bam 32152 + 0 properly paired (80.38%:nan%) | |
| 79.54 bam/SRR1553594.bam 31814 + 0 properly paired (79.54%:nan%) | |
| 79.48 bam/SRR1553498.bam 31792 + 0 properly paired (79.48%:nan%) | |
| 79.41 bam/SRR1972756.bam 31764 + 0 properly paired (79.41%:nan%) | |
| 78.85 bam/SRR1972780.bam 31540 + 0 properly paired (78.85%:nan%) | |
| 78.46 bam/SRR1553496.bam 31384 + 0 properly paired (78.46%:nan%) | |
| 78.45 bam/SRR1553456.bam 31380 + 0 properly paired (78.45%:nan%) | |
| 78.36 bam/SRR1553592.bam 31344 + 0 properly paired (78.36%:nan%) | |
| 78.25 bam/SRR1553495.bam 31302 + 0 properly paired (78.25%:nan%) | |
| 78.16 bam/SRR1553441.bam 31264 + 0 properly paired (78.16%:nan%) | |
| 76.49 bam/SRR1553518.bam 30598 + 0 properly paired (76.49%:nan%) | |
| 75.52 bam/SRR1553510.bam 30206 + 0 properly paired (75.52%:nan%) | |
| 74.63 bam/SRR1553586.bam 29854 + 0 properly paired (74.63%:nan%) | |
| 73.51 bam/SRR1553468.bam 29406 + 0 properly paired (73.51%:nan%) | |
| 72.62 bam/SRR1972739.bam 29050 + 0 properly paired (72.62%:nan%) | |
| 71.04 bam/SRR1553435.bam 28416 + 0 properly paired (71.04%:nan%) | |
| 70.29 bam/SRR1553584.bam 28116 + 0 properly paired (70.29%:nan%) | |
| 70.07 bam/SRR1553583.bam 28030 + 0 properly paired (70.07%:nan%) | |
| 67.87 bam/SRR1553458.bam 27148 + 0 properly paired (67.87%:nan%) | |
| 67.15 bam/SRR1553577.bam 26862 + 0 properly paired (67.15%:nan%) | |
| 66.80 bam/SRR1972856.bam 26720 + 0 properly paired (66.80%:nan%) | |
| 66.61 bam/SRR1553442.bam 26644 + 0 properly paired (66.61%:nan%) | |
| 66.36 bam/SRR1553569.bam 26544 + 0 properly paired (66.36%:nan%) | |
| 64.95 bam/SRR1972966.bam 25978 + 0 properly paired (64.95%:nan%) | |
| 63.28 bam/SRR1553566.bam 25312 + 0 properly paired (63.28%:nan%) | |
| 62.99 bam/SRR1553453.bam 20764 + 0 properly paired (62.99%:nan%) | |
| 62.98 bam/SRR1735070.bam 25190 + 0 properly paired (62.98%:nan%) | |
| 62.71 bam/SRR1553512.bam 25086 + 0 properly paired (62.71%:nan%) | |
| 60.89 bam/SRR1553463.bam 21834 + 0 properly paired (60.89%:nan%) | |
| 60.74 bam/SRR1553437.bam 24296 + 0 properly paired (60.74%:nan%) | |
| 59.75 bam/SRR1972718.bam 23898 + 0 properly paired (59.75%:nan%) | |
| 58.78 bam/SRR1553464.bam 23512 + 0 properly paired (58.78%:nan%) | |
| 57.13 bam/SRR1553570.bam 22854 + 0 properly paired (57.13%:nan%) | |
| 57.10 bam/SRR1553505.bam 22840 + 0 properly paired (57.10%:nan%) | |
| 57.09 bam/SRR1972826.bam 22838 + 0 properly paired (57.09%:nan%) | |
| 56.52 bam/SRR1553558.bam 22610 + 0 properly paired (56.52%:nan%) | |
| 56.40 bam/SRR1553427.bam 22560 + 0 properly paired (56.40%:nan%) | |
| 56.20 bam/SRR1972829.bam 22480 + 0 properly paired (56.20%:nan%) | |
| 55.62 bam/SRR1553451.bam 22248 + 0 properly paired (55.62%:nan%) | |
| 55.61 bam/SRR1972834.bam 22244 + 0 properly paired (55.61%:nan%) | |
| 55.47 bam/SRR1972967.bam 22186 + 0 properly paired (55.47%:nan%) | |
| 54.92 bam/SRR1735234.bam 21968 + 0 properly paired (54.92%:nan%) | |
| 54.74 bam/SRR1553472.bam 21896 + 0 properly paired (54.74%:nan%) | |
| 53.68 bam/SRR1553506.bam 21472 + 0 properly paired (53.68%:nan%) | |
| 53.51 bam/SRR1553578.bam 21404 + 0 properly paired (53.51%:nan%) | |
| 53.39 bam/SRR1972651.bam 21358 + 0 properly paired (53.39%:nan%) | |
| 53.36 bam/SRR1553529.bam 21344 + 0 properly paired (53.36%:nan%) | |
| 53.21 bam/SRR1553455.bam 15166 + 0 properly paired (53.21%:nan%) | |
| 53.14 bam/SRR1553524.bam 21258 + 0 properly paired (53.14%:nan%) | |
| 52.93 bam/SRR1553436.bam 21172 + 0 properly paired (52.93%:nan%) | |
| 52.71 bam/SRR1553581.bam 21084 + 0 properly paired (52.71%:nan%) | |
| 52.15 bam/SRR1553527.bam 20862 + 0 properly paired (52.15%:nan%) | |
| 51.75 bam/SRR1553549.bam 20702 + 0 properly paired (51.75%:nan%) | |
| 51.02 bam/SRR1553438.bam 20410 + 0 properly paired (51.02%:nan%) | |
| 50.79 bam/SRR1553562.bam 20316 + 0 properly paired (50.79%:nan%) | |
| 49.81 bam/SRR1553528.bam 19926 + 0 properly paired (49.81%:nan%) | |
| 49.17 bam/SRR1553557.bam 19668 + 0 properly paired (49.17%:nan%) | |
| 48.80 bam/SRR1972744.bam 19520 + 0 properly paired (48.80%:nan%) | |
| 48.79 bam/SRR1972742.bam 19516 + 0 properly paired (48.79%:nan%) | |
| 48.65 bam/SRR1553471.bam 19460 + 0 properly paired (48.65%:nan%) | |
| 48.25 bam/SRR1735111.bam 19302 + 0 properly paired (48.25%:nan%) | |
| 47.61 bam/SRR1972844.bam 19044 + 0 properly paired (47.61%:nan%) | |
| 45.76 bam/SRR1553523.bam 18304 + 0 properly paired (45.76%:nan%) | |
| 45.18 bam/SRR1553530.bam 18074 + 0 properly paired (45.18%:nan%) | |
| 44.34 bam/SRR1553457.bam 10248 + 0 properly paired (44.34%:nan%) | |
| 44.16 bam/SRR1553575.bam 17664 + 0 properly paired (44.16%:nan%) | |
| 44.10 bam/SRR1553561.bam 17638 + 0 properly paired (44.10%:nan%) | |
| 43.56 bam/SRR1553443.bam 17422 + 0 properly paired (43.56%:nan%) | |
| 42.65 bam/SRR1972775.bam 17060 + 0 properly paired (42.65%:nan%) | |
| 42.20 bam/SRR1613381.bam 16882 + 0 properly paired (42.20%:nan%) | |
| 41.58 bam/SRR1553461.bam 9752 + 0 properly paired (41.58%:nan%) | |
| 41.55 bam/SRR1553428.bam 16620 + 0 properly paired (41.55%:nan%) | |
| 41.15 bam/SRR1972827.bam 16460 + 0 properly paired (41.15%:nan%) | |
| 40.83 bam/SRR1553534.bam 16334 + 0 properly paired (40.83%:nan%) | |
| 40.10 bam/SRR1553536.bam 16040 + 0 properly paired (40.10%:nan%) | |
| 38.82 bam/SRR1553533.bam 15530 + 0 properly paired (38.82%:nan%) | |
| 38.73 bam/SRR1553433.bam 15490 + 0 properly paired (38.73%:nan%) | |
| 38.19 bam/SRR1735239.bam 15278 + 0 properly paired (38.19%:nan%) | |
| 38.01 bam/SRR1553504.bam 15206 + 0 properly paired (38.01%:nan%) | |
| 37.70 bam/SRR1972822.bam 15080 + 0 properly paired (37.70%:nan%) | |
| 36.86 bam/SRR1553605.bam 14744 + 0 properly paired (36.86%:nan%) | |
| 35.37 bam/SRR1553574.bam 14148 + 0 properly paired (35.37%:nan%) | |
| 35.08 bam/SRR1553454.bam 14034 + 0 properly paired (35.08%:nan%) | |
| 34.85 bam/SRR1972957.bam 13940 + 0 properly paired (34.85%:nan%) | |
| 34.83 bam/SRR1553550.bam 13930 + 0 properly paired (34.83%:nan%) | |
| 34.80 bam/SRR1972738.bam 13922 + 0 properly paired (34.80%:nan%) | |
| 34.60 bam/SRR1553606.bam 13840 + 0 properly paired (34.60%:nan%) | |
| 33.35 bam/SRR1553556.bam 13340 + 0 properly paired (33.35%:nan%) | |
| 31.13 bam/SRR1972973.bam 12452 + 0 properly paired (31.13%:nan%) | |
| 30.92 bam/SRR1735257.bam 12368 + 0 properly paired (30.92%:nan%) | |
| 30.92 bam/SRR1553573.bam 12370 + 0 properly paired (30.92%:nan%) | |
| 30.51 bam/SRR1553418.bam 11180 + 0 properly paired (30.51%:nan%) | |
| 30.04 bam/SRR1972812.bam 12018 + 0 properly paired (30.04%:nan%) | |
| 29.71 bam/SRR1972810.bam 11884 + 0 properly paired (29.71%:nan%) | |
| 29.61 bam/SRR1553541.bam 11842 + 0 properly paired (29.61%:nan%) | |
| 28.88 bam/SRR1972912.bam 11552 + 0 properly paired (28.88%:nan%) | |
| 28.71 bam/SRR1735208.bam 11486 + 0 properly paired (28.71%:nan%) | |
| 28.49 bam/SRR1553503.bam 11394 + 0 properly paired (28.49%:nan%) | |
| 27.94 bam/SRR1972781.bam 11176 + 0 properly paired (27.94%:nan%) | |
| 27.67 bam/SRR1972626.bam 11068 + 0 properly paired (27.67%:nan%) | |
| 27.52 bam/SRR1972627.bam 11008 + 0 properly paired (27.52%:nan%) | |
| 27.11 bam/SRR1735263.bam 10844 + 0 properly paired (27.11%:nan%) | |
| 26.48 bam/SRR1553532.bam 10592 + 0 properly paired (26.48%:nan%) | |
| 26.37 bam/SRR1553576.bam 10548 + 0 properly paired (26.37%:nan%) | |
| 26.07 bam/SRR1735079.bam 10426 + 0 properly paired (26.07%:nan%) | |
| 26.03 bam/SRR1735198.bam 10410 + 0 properly paired (26.03%:nan%) | |
| 25.48 bam/SRR1972896.bam 10190 + 0 properly paired (25.48%:nan%) | |
| 25.40 bam/SRR1735025.bam 10162 + 0 properly paired (25.40%:nan%) | |
| 25.31 bam/SRR1735237.bam 10126 + 0 properly paired (25.31%:nan%) | |
| 24.21 bam/SRR1972965.bam 9684 + 0 properly paired (24.21%:nan%) | |
| 24.15 bam/SRR1734989.bam 9660 + 0 properly paired (24.15%:nan%) | |
| 23.95 bam/SRR1735251.bam 9580 + 0 properly paired (23.95%:nan%) | |
| 23.86 bam/SRR1553582.bam 9544 + 0 properly paired (23.86%:nan%) | |
| 23.85 bam/SRR1553555.bam 9538 + 0 properly paired (23.85%:nan%) | |
| 23.66 bam/SRR1553449.bam 5798 + 0 properly paired (23.66%:nan%) | |
| 23.47 bam/SRR1972835.bam 9388 + 0 properly paired (23.47%:nan%) | |
| 23.26 bam/SRR1735140.bam 9304 + 0 properly paired (23.26%:nan%) | |
| 23.21 bam/SRR1553434.bam 9284 + 0 properly paired (23.21%:nan%) | |
| 23.02 bam/SRR1972743.bam 9208 + 0 properly paired (23.02%:nan%) | |
| 22.68 bam/SRR1972832.bam 9070 + 0 properly paired (22.68%:nan%) | |
| 22.59 bam/SRR1972970.bam 9034 + 0 properly paired (22.59%:nan%) | |
| 22.55 bam/SRR1972754.bam 9020 + 0 properly paired (22.55%:nan%) | |
| 22.41 bam/SRR1972846.bam 8962 + 0 properly paired (22.41%:nan%) | |
| 22.01 bam/SRR1553444.bam 8806 + 0 properly paired (22.01%:nan%) | |
| 21.92 bam/SRR1553424.bam 8768 + 0 properly paired (21.92%:nan%) | |
| 21.90 bam/SRR1553459.bam 8760 + 0 properly paired (21.90%:nan%) | |
| 21.56 bam/SRR1972852.bam 8624 + 0 properly paired (21.56%:nan%) | |
| 21.47 bam/SRR1553542.bam 8588 + 0 properly paired (21.47%:nan%) | |
| 21.30 bam/SRR1553431.bam 8522 + 0 properly paired (21.30%:nan%) | |
| 21.09 bam/SRR1735250.bam 8434 + 0 properly paired (21.09%:nan%) | |
| 20.86 bam/SRR1972768.bam 8342 + 0 properly paired (20.86%:nan%) | |
| 20.48 bam/SRR1553483.bam 8190 + 0 properly paired (20.48%:nan%) | |
| 19.28 bam/SRR1553531.bam 7712 + 0 properly paired (19.28%:nan%) | |
| 19.25 bam/SRR1972968.bam 7698 + 0 properly paired (19.25%:nan%) | |
| 18.93 bam/SRR1972959.bam 7574 + 0 properly paired (18.93%:nan%) | |
| 18.87 bam/SRR1972749.bam 7548 + 0 properly paired (18.87%:nan%) | |
| 18.43 bam/SRR1553421.bam 7374 + 0 properly paired (18.43%:nan%) | |
| 18.39 bam/SRR1553587.bam 7356 + 0 properly paired (18.39%:nan%) | |
| 18.07 bam/SRR1553519.bam 7230 + 0 properly paired (18.07%:nan%) | |
| 18.01 bam/SRR1972664.bam 7202 + 0 properly paired (18.01%:nan%) | |
| 17.60 bam/SRR1972760.bam 7038 + 0 properly paired (17.60%:nan%) | |
| 17.29 bam/SRR1735181.bam 6918 + 0 properly paired (17.29%:nan%) | |
| 16.80 bam/SRR1972808.bam 6718 + 0 properly paired (16.80%:nan%) | |
| 15.80 bam/SRR1972643.bam 6320 + 0 properly paired (15.80%:nan%) | |
| 15.79 bam/SRR1553432.bam 6316 + 0 properly paired (15.79%:nan%) | |
| 15.61 bam/SRR1553543.bam 6246 + 0 properly paired (15.61%:nan%) | |
| 14.96 bam/SRR1553462.bam 5986 + 0 properly paired (14.96%:nan%) | |
| 14.90 bam/SRR1735060.bam 5960 + 0 properly paired (14.90%:nan%) | |
| 13.85 bam/SRR1972955.bam 5542 + 0 properly paired (13.85%:nan%) | |
| 13.68 bam/SRR1553544.bam 5474 + 0 properly paired (13.68%:nan%) | |
| 13.34 bam/SRR1735004.bam 5336 + 0 properly paired (13.34%:nan%) | |
| 13.13 bam/SRR1972771.bam 5252 + 0 properly paired (13.13%:nan%) | |
| 12.61 bam/SRR1972800.bam 5044 + 0 properly paired (12.61%:nan%) | |
| 12.56 bam/SRR1972724.bam 5024 + 0 properly paired (12.56%:nan%) | |
| 12.39 bam/SRR1553422.bam 4956 + 0 properly paired (12.39%:nan%) | |
| 12.35 bam/SRR1972799.bam 4942 + 0 properly paired (12.35%:nan%) | |
| 12.33 bam/SRR1553445.bam 4930 + 0 properly paired (12.33%:nan%) | |
| 12.30 bam/SRR1553465.bam 4920 + 0 properly paired (12.30%:nan%) | |
| 12.21 bam/SRR1553588.bam 4886 + 0 properly paired (12.21%:nan%) | |
| 12.00 bam/SRR1735064.bam 4802 + 0 properly paired (12.00%:nan%) | |
| 11.89 bam/SRR1972811.bam 4754 + 0 properly paired (11.89%:nan%) | |
| 11.76 bam/SRR1553522.bam 4702 + 0 properly paired (11.76%:nan%) | |
| 11.61 bam/SRR1553484.bam 4646 + 0 properly paired (11.61%:nan%) | |
| 11.25 bam/SRR1735081.bam 4500 + 0 properly paired (11.25%:nan%) | |
| 11.06 bam/SRR1553597.bam 4422 + 0 properly paired (11.06%:nan%) | |
| 10.77 bam/SRR1553423.bam 4310 + 0 properly paired (10.77%:nan%) | |
| 10.06 bam/SRR1735003.bam 4026 + 0 properly paired (10.06%:nan%) | |
| 10.02 bam/SRR1553515.bam 4010 + 0 properly paired (10.02%:nan%) | |
| 9.84 bam/SRR1972964.bam 3934 + 0 properly paired (9.84%:nan%) | |
| 9.71 bam/SRR1735047.bam 3884 + 0 properly paired (9.71%:nan%) | |
| 9.71 bam/SRR1553452.bam 3886 + 0 properly paired (9.71%:nan%) | |
| 9.70 bam/SRR1972833.bam 3878 + 0 properly paired (9.70%:nan%) | |
| 9.65 bam/SRR1972828.bam 3858 + 0 properly paired (9.65%:nan%) | |
| 9.53 bam/SRR1553520.bam 3810 + 0 properly paired (9.53%:nan%) | |
| 8.98 bam/SRR1972711.bam 3592 + 0 properly paired (8.98%:nan%) | |
| 8.82 bam/SRR1972733.bam 3526 + 0 properly paired (8.82%:nan%) | |
| 8.42 bam/SRR1972887.bam 3368 + 0 properly paired (8.42%:nan%) | |
| 8.38 bam/SRR1735058.bam 3350 + 0 properly paired (8.38%:nan%) | |
| 8.27 bam/SRR1553508.bam 3308 + 0 properly paired (8.27%:nan%) | |
| 8.15 bam/SRR1553521.bam 3260 + 0 properly paired (8.15%:nan%) | |
| 8.12 bam/SRR1972819.bam 3248 + 0 properly paired (8.12%:nan%) | |
| 7.86 bam/SRR1972764.bam 3142 + 0 properly paired (7.86%:nan%) | |
| 7.77 bam/SRR1972721.bam 3108 + 0 properly paired (7.77%:nan%) | |
| 7.56 bam/SRR1553446.bam 3024 + 0 properly paired (7.56%:nan%) | |
| 7.41 bam/SRR1735171.bam 2964 + 0 properly paired (7.41%:nan%) | |
| 7.38 bam/SRR1972795.bam 2954 + 0 properly paired (7.38%:nan%) | |
| 7.37 bam/SRR1553598.bam 2950 + 0 properly paired (7.37%:nan%) | |
| 7.19 bam/SRR1972612.bam 2874 + 0 properly paired (7.19%:nan%) | |
| 7.16 bam/SRR1735134.bam 2866 + 0 properly paired (7.16%:nan%) | |
| 6.96 bam/SRR1972837.bam 2784 + 0 properly paired (6.96%:nan%) | |
| 6.86 bam/SRR1972737.bam 2746 + 0 properly paired (6.86%:nan%) | |
| 6.66 bam/SRR1972783.bam 2664 + 0 properly paired (6.66%:nan%) | |
| 6.57 bam/SRR1972860.bam 2628 + 0 properly paired (6.57%:nan%) | |
| 6.54 bam/SRR1972956.bam 2616 + 0 properly paired (6.54%:nan%) | |
| 6.42 bam/SRR1735243.bam 2568 + 0 properly paired (6.42%:nan%) | |
| 6.27 bam/SRR1972757.bam 2508 + 0 properly paired (6.27%:nan%) | |
| 6.21 bam/SRR1735045.bam 2484 + 0 properly paired (6.21%:nan%) | |
| 6.11 bam/SRR1972779.bam 2442 + 0 properly paired (6.11%:nan%) | |
| 6.02 bam/SRR1735041.bam 2406 + 0 properly paired (6.02%:nan%) | |
| 6.01 bam/SRR1735019.bam 2404 + 0 properly paired (6.01%:nan%) | |
| 5.82 bam/SRR1972821.bam 2328 + 0 properly paired (5.82%:nan%) | |
| 5.82 bam/SRR1553450.bam 2330 + 0 properly paired (5.82%:nan%) | |
| 5.74 bam/SRR1553535.bam 2296 + 0 properly paired (5.74%:nan%) | |
| 5.60 bam/SRR1972802.bam 2242 + 0 properly paired (5.60%:nan%) | |
| 5.42 bam/SRR1972772.bam 2168 + 0 properly paired (5.42%:nan%) | |
| 5.28 bam/SRR1972710.bam 2112 + 0 properly paired (5.28%:nan%) | |
| 5.25 bam/SRR1553516.bam 2098 + 0 properly paired (5.25%:nan%) | |
| 5.20 bam/SRR1735136.bam 2080 + 0 properly paired (5.20%:nan%) | |
| 4.97 bam/SRR1553448.bam 1988 + 0 properly paired (4.97%:nan%) | |
| 4.90 bam/SRR1553603.bam 1960 + 0 properly paired (4.90%:nan%) | |
| 4.82 bam/SRR1735029.bam 1928 + 0 properly paired (4.82%:nan%) | |
| 4.68 bam/SRR1553489.bam 1870 + 0 properly paired (4.68%:nan%) | |
| 4.65 bam/SRR1972949.bam 1862 + 0 properly paired (4.65%:nan%) | |
| 4.61 bam/SRR1735017.bam 1844 + 0 properly paired (4.61%:nan%) | |
| 4.52 bam/SRR1972838.bam 1808 + 0 properly paired (4.52%:nan%) | |
| 4.52 bam/SRR1972786.bam 1806 + 0 properly paired (4.52%:nan%) | |
| 4.51 bam/SRR1972918.bam 1804 + 0 properly paired (4.51%:nan%) | |
| 4.43 bam/SRR1972753.bam 1772 + 0 properly paired (4.43%:nan%) | |
| 4.37 bam/SRR1553595.bam 1746 + 0 properly paired (4.37%:nan%) | |
| 4.08 bam/SRR1735148.bam 1634 + 0 properly paired (4.08%:nan%) | |
| 4.01 bam/SRR1735189.bam 1604 + 0 properly paired (4.01%:nan%) | |
| 3.99 bam/SRR1553469.bam 1594 + 0 properly paired (3.99%:nan%) | |
| 3.97 bam/SRR1972777.bam 1590 + 0 properly paired (3.97%:nan%) | |
| 3.97 bam/SRR1553447.bam 1586 + 0 properly paired (3.97%:nan%) | |
| 3.92 bam/SRR1735195.bam 1568 + 0 properly paired (3.92%:nan%) | |
| 3.86 bam/SRR1972818.bam 1544 + 0 properly paired (3.86%:nan%) | |
| 3.75 bam/SRR1735157.bam 1502 + 0 properly paired (3.75%:nan%) | |
| 3.73 bam/SRR1972770.bam 1492 + 0 properly paired (3.73%:nan%) | |
| 3.71 bam/SRR1553507.bam 1486 + 0 properly paired (3.71%:nan%) | |
| 3.69 bam/SRR1734996.bam 1476 + 0 properly paired (3.69%:nan%) | |
| 3.69 bam/SRR1553601.bam 1478 + 0 properly paired (3.69%:nan%) | |
| 3.64 bam/SRR1553539.bam 1454 + 0 properly paired (3.64%:nan%) | |
| 3.55 bam/SRR1735075.bam 1418 + 0 properly paired (3.55%:nan%) | |
| 3.50 bam/SRR1972613.bam 1400 + 0 properly paired (3.50%:nan%) | |
| 3.41 bam/SRR1735177.bam 272 + 0 properly paired (3.41%:nan%) | |
| 3.22 bam/SRR1735085.bam 1286 + 0 properly paired (3.22%:nan%) | |
| 3.01 bam/SRR1553564.bam 1202 + 0 properly paired (3.01%:nan%) | |
| 2.99 bam/SRR1972962.bam 1194 + 0 properly paired (2.99%:nan%) | |
| 2.95 bam/SRR1972958.bam 1180 + 0 properly paired (2.95%:nan%) | |
| 2.92 bam/SRR1553490.bam 1168 + 0 properly paired (2.92%:nan%) | |
| 2.89 bam/SRR1972969.bam 1156 + 0 properly paired (2.89%:nan%) | |
| 2.84 bam/SRR1972820.bam 1138 + 0 properly paired (2.84%:nan%) | |
| 2.78 bam/SRR1972817.bam 1112 + 0 properly paired (2.78%:nan%) | |
| 2.74 bam/SRR1735173.bam 1096 + 0 properly paired (2.74%:nan%) | |
| 2.67 bam/SRR1972787.bam 1068 + 0 properly paired (2.67%:nan%) | |
| 2.66 bam/SRR1972793.bam 1064 + 0 properly paired (2.66%:nan%) | |
| 2.65 bam/SRR1972879.bam 1060 + 0 properly paired (2.65%:nan%) | |
| 2.64 bam/SRR1735032.bam 1054 + 0 properly paired (2.64%:nan%) | |
| 2.51 bam/SRR1972841.bam 1006 + 0 properly paired (2.51%:nan%) | |
| 2.50 bam/SRR1972855.bam 1000 + 0 properly paired (2.50%:nan%) | |
| 2.47 bam/SRR1553602.bam 990 + 0 properly paired (2.47%:nan%) | |
| 2.43 bam/SRR1972902.bam 970 + 0 properly paired (2.43%:nan%) | |
| 2.42 bam/SRR1972900.bam 966 + 0 properly paired (2.42%:nan%) | |
| 2.39 bam/SRR1972882.bam 958 + 0 properly paired (2.39%:nan%) | |
| 2.37 bam/SRR1972845.bam 950 + 0 properly paired (2.37%:nan%) | |
| 2.37 bam/SRR1553563.bam 950 + 0 properly paired (2.37%:nan%) | |
| 2.34 bam/SRR1553491.bam 936 + 0 properly paired (2.34%:nan%) | |
| 2.29 bam/SRR1735022.bam 918 + 0 properly paired (2.29%:nan%) | |
| 2.19 bam/SRR1972785.bam 876 + 0 properly paired (2.19%:nan%) | |
| 2.19 bam/SRR1735090.bam 876 + 0 properly paired (2.19%:nan%) | |
| 2.17 bam/SRR1553492.bam 870 + 0 properly paired (2.17%:nan%) | |
| 2.13 bam/SRR1972857.bam 852 + 0 properly paired (2.13%:nan%) | |
| 2.13 bam/SRR1972640.bam 850 + 0 properly paired (2.13%:nan%) | |
| 2.09 bam/SRR1972816.bam 836 + 0 properly paired (2.09%:nan%) | |
| 2.06 bam/SRR1553560.bam 826 + 0 properly paired (2.06%:nan%) | |
| 2.04 bam/SRR1972763.bam 816 + 0 properly paired (2.04%:nan%) | |
| 2.03 bam/SRR1972948.bam 812 + 0 properly paired (2.03%:nan%) | |
| 2.01 bam/SRR1972836.bam 802 + 0 properly paired (2.01%:nan%) | |
| 2.01 bam/SRR1972758.bam 802 + 0 properly paired (2.01%:nan%) | |
| 2.00 bam/SRR1735222.bam 798 + 0 properly paired (2.00%:nan%) | |
| 1.99 bam/SRR1972951.bam 796 + 0 properly paired (1.99%:nan%) | |
| 1.92 bam/SRR1735087.bam 770 + 0 properly paired (1.92%:nan%) | |
| 1.92 bam/SRR1553604.bam 766 + 0 properly paired (1.92%:nan%) | |
| 1.88 bam/SRR1735245.bam 752 + 0 properly paired (1.88%:nan%) | |
| 1.82 bam/SRR1735108.bam 730 + 0 properly paired (1.82%:nan%) | |
| 1.78 bam/SRR1972928.bam 710 + 0 properly paired (1.78%:nan%) | |
| 1.77 bam/SRR1553460.bam 708 + 0 properly paired (1.77%:nan%) | |
| 1.75 bam/SRR1972806.bam 700 + 0 properly paired (1.75%:nan%) | |
| 1.73 bam/SRR1972934.bam 694 + 0 properly paired (1.73%:nan%) | |
| 1.67 bam/SRR1972880.bam 666 + 0 properly paired (1.67%:nan%) | |
| 1.60 bam/SRR1735096.bam 642 + 0 properly paired (1.60%:nan%) | |
| 1.60 bam/SRR1553559.bam 640 + 0 properly paired (1.60%:nan%) | |
| 1.56 bam/SRR1735038.bam 624 + 0 properly paired (1.56%:nan%) | |
| 1.54 bam/SRR1972921.bam 614 + 0 properly paired (1.54%:nan%) | |
| 1.53 bam/SRR1972932.bam 610 + 0 properly paired (1.53%:nan%) | |
| 1.53 bam/SRR1972617.bam 612 + 0 properly paired (1.53%:nan%) | |
| 1.52 bam/SRR1972901.bam 608 + 0 properly paired (1.52%:nan%) | |
| 1.52 bam/SRR1972755.bam 606 + 0 properly paired (1.52%:nan%) | |
| 1.51 bam/SRR1553526.bam 604 + 0 properly paired (1.51%:nan%) | |
| 1.48 bam/SRR1972803.bam 594 + 0 properly paired (1.48%:nan%) | |
| 1.46 bam/SRR1735035.bam 584 + 0 properly paired (1.46%:nan%) | |
| 1.46 bam/SRR1553501.bam 582 + 0 properly paired (1.46%:nan%) | |
| 1.45 bam/SRR1972782.bam 580 + 0 properly paired (1.45%:nan%) | |
| 1.45 bam/SRR1972650.bam 580 + 0 properly paired (1.45%:nan%) | |
| 1.44 bam/SRR1972824.bam 576 + 0 properly paired (1.44%:nan%) | |
| 1.43 bam/SRR1972778.bam 574 + 0 properly paired (1.43%:nan%) | |
| 1.43 bam/SRR1735236.bam 570 + 0 properly paired (1.43%:nan%) | |
| 1.39 bam/SRR1972886.bam 558 + 0 properly paired (1.39%:nan%) | |
| 1.39 bam/SRR1972831.bam 558 + 0 properly paired (1.39%:nan%) | |
| 1.39 bam/SRR1735248.bam 558 + 0 properly paired (1.39%:nan%) | |
| 1.39 bam/SRR1553419.bam 558 + 0 properly paired (1.39%:nan%) | |
| 1.38 bam/SRR1972720.bam 552 + 0 properly paired (1.38%:nan%) | |
| 1.38 bam/SRR1972615.bam 552 + 0 properly paired (1.38%:nan%) | |
| 1.36 bam/SRR1735170.bam 544 + 0 properly paired (1.36%:nan%) | |
| 1.33 bam/SRR1735023.bam 534 + 0 properly paired (1.33%:nan%) | |
| 1.26 bam/SRR1735135.bam 504 + 0 properly paired (1.26%:nan%) | |
| 1.26 bam/SRR1735040.bam 502 + 0 properly paired (1.26%:nan%) | |
| 1.25 bam/SRR1553493.bam 500 + 0 properly paired (1.25%:nan%) | |
| 1.21 bam/SRR1972666.bam 486 + 0 properly paired (1.21%:nan%) | |
| 1.21 bam/SRR1972654.bam 484 + 0 properly paired (1.21%:nan%) | |
| 1.21 bam/SRR1734993.bam 486 + 0 properly paired (1.21%:nan%) | |
| 1.15 bam/SRR1735071.bam 462 + 0 properly paired (1.15%:nan%) | |
| 1.11 bam/SRR1972796.bam 446 + 0 properly paired (1.11%:nan%) | |
| 1.09 bam/SRR1553494.bam 436 + 0 properly paired (1.09%:nan%) | |
| 1.07 bam/SRR1735078.bam 428 + 0 properly paired (1.07%:nan%) | |
| 1.05 bam/SRR1972863.bam 420 + 0 properly paired (1.05%:nan%) | |
| 1.04 bam/SRR1735164.bam 414 + 0 properly paired (1.04%:nan%) | |
| 1.03 bam/SRR1972765.bam 412 + 0 properly paired (1.03%:nan%) | |
| 1.03 bam/SRR1553502.bam 410 + 0 properly paired (1.03%:nan%) | |
| 1.00 bam/SRR1972961.bam 402 + 0 properly paired (1.00%:nan%) | |
| 1.00 bam/SRR1735074.bam 400 + 0 properly paired (1.00%:nan%) | |
| 0.99 bam/SRR1735039.bam 396 + 0 properly paired (0.99%:nan%) | |
| 0.96 bam/SRR1972925.bam 384 + 0 properly paired (0.96%:nan%) | |
| 0.96 bam/SRR1553596.bam 384 + 0 properly paired (0.96%:nan%) | |
| 0.95 bam/SRR1972842.bam 382 + 0 properly paired (0.95%:nan%) | |
| 0.94 bam/SRR1972644.bam 378 + 0 properly paired (0.94%:nan%) | |
| 0.93 bam/SRR1972805.bam 370 + 0 properly paired (0.93%:nan%) | |
| 0.93 bam/SRR1735214.bam 370 + 0 properly paired (0.93%:nan%) | |
| 0.90 bam/SRR1972734.bam 360 + 0 properly paired (0.90%:nan%) | |
| 0.88 bam/SRR1972809.bam 350 + 0 properly paired (0.88%:nan%) | |
| 0.86 bam/SRR1735231.bam 344 + 0 properly paired (0.86%:nan%) | |
| 0.86 bam/SRR1553608.bam 342 + 0 properly paired (0.86%:nan%) | |
| 0.86 bam/SRR1553548.bam 342 + 0 properly paired (0.86%:nan%) | |
| 0.83 bam/SRR1972767.bam 334 + 0 properly paired (0.83%:nan%) | |
| 0.81 bam/SRR1972823.bam 324 + 0 properly paired (0.81%:nan%) | |
| 0.79 bam/SRR1735160.bam 316 + 0 properly paired (0.79%:nan%) | |
| 0.77 bam/SRR1972884.bam 310 + 0 properly paired (0.77%:nan%) | |
| 0.77 bam/SRR1972801.bam 308 + 0 properly paired (0.77%:nan%) | |
| 0.77 bam/SRR1972667.bam 310 + 0 properly paired (0.77%:nan%) | |
| 0.74 bam/SRR1972697.bam 296 + 0 properly paired (0.74%:nan%) | |
| 0.74 bam/SRR1735262.bam 296 + 0 properly paired (0.74%:nan%) | |
| 0.74 bam/SRR1735107.bam 296 + 0 properly paired (0.74%:nan%) | |
| 0.73 bam/SRR1972766.bam 292 + 0 properly paired (0.73%:nan%) | |
| 0.71 bam/SRR1735241.bam 282 + 0 properly paired (0.71%:nan%) | |
| 0.71 bam/SRR1553552.bam 282 + 0 properly paired (0.71%:nan%) | |
| 0.71 bam/SRR1553540.bam 282 + 0 properly paired (0.71%:nan%) | |
| 0.70 bam/SRR1972751.bam 280 + 0 properly paired (0.70%:nan%) | |
| 0.70 bam/SRR1735172.bam 280 + 0 properly paired (0.70%:nan%) | |
| 0.69 bam/SRR1972732.bam 276 + 0 properly paired (0.69%:nan%) | |
| 0.69 bam/SRR1735011.bam 278 + 0 properly paired (0.69%:nan%) | |
| 0.63 bam/SRR1735228.bam 250 + 0 properly paired (0.63%:nan%) | |
| 0.62 bam/SRR1972639.bam 248 + 0 properly paired (0.62%:nan%) | |
| 0.62 bam/SRR1735016.bam 248 + 0 properly paired (0.62%:nan%) | |
| 0.61 bam/SRR1972804.bam 244 + 0 properly paired (0.61%:nan%) | |
| 0.61 bam/SRR1553547.bam 244 + 0 properly paired (0.61%:nan%) | |
| 0.60 bam/SRR1735169.bam 242 + 0 properly paired (0.60%:nan%) | |
| 0.59 bam/SRR1972972.bam 236 + 0 properly paired (0.59%:nan%) | |
| 0.59 bam/SRR1972736.bam 236 + 0 properly paired (0.59%:nan%) | |
| 0.58 bam/SRR1735118.bam 230 + 0 properly paired (0.58%:nan%) | |
| 0.57 bam/SRR1735072.bam 226 + 0 properly paired (0.57%:nan%) | |
| 0.55 bam/SRR1972825.bam 220 + 0 properly paired (0.55%:nan%) | |
| 0.55 bam/SRR1735110.bam 222 + 0 properly paired (0.55%:nan%) | |
| 0.54 bam/SRR1972971.bam 216 + 0 properly paired (0.54%:nan%) | |
| 0.54 bam/SRR1735223.bam 216 + 0 properly paired (0.54%:nan%) | |
| 0.52 bam/SRR1735178.bam 206 + 0 properly paired (0.52%:nan%) | |
| 0.52 bam/SRR1553546.bam 206 + 0 properly paired (0.52%:nan%) | |
| 0.51 bam/SRR1972740.bam 204 + 0 properly paired (0.51%:nan%) | |
| 0.50 bam/SRR1553466.bam 200 + 0 properly paired (0.50%:nan%) | |
| 0.49 bam/SRR1972813.bam 198 + 0 properly paired (0.49%:nan%) | |
| 0.49 bam/SRR1972726.bam 194 + 0 properly paired (0.49%:nan%) | |
| 0.49 bam/SRR1735036.bam 196 + 0 properly paired (0.49%:nan%) | |
| 0.48 bam/SRR1972797.bam 192 + 0 properly paired (0.48%:nan%) | |
| 0.48 bam/SRR1553538.bam 192 + 0 properly paired (0.48%:nan%) | |
| 0.47 bam/SRR1972701.bam 190 + 0 properly paired (0.47%:nan%) | |
| 0.45 bam/SRR1735175.bam 180 + 0 properly paired (0.45%:nan%) | |
| 0.44 bam/SRR1735206.bam 176 + 0 properly paired (0.44%:nan%) | |
| 0.41 bam/SRR1972637.bam 164 + 0 properly paired (0.41%:nan%) | |
| 0.41 bam/SRR1972618.bam 166 + 0 properly paired (0.41%:nan%) | |
| 0.41 bam/SRR1735061.bam 164 + 0 properly paired (0.41%:nan%) | |
| 0.41 bam/SRR1734998.bam 162 + 0 properly paired (0.41%:nan%) | |
| 0.40 bam/SRR1972629.bam 160 + 0 properly paired (0.40%:nan%) | |
| 0.40 bam/SRR1553545.bam 160 + 0 properly paired (0.40%:nan%) | |
| 0.39 bam/SRR1735258.bam 158 + 0 properly paired (0.39%:nan%) | |
| 0.38 bam/SRR1735185.bam 152 + 0 properly paired (0.38%:nan%) | |
| 0.38 bam/SRR1735051.bam 152 + 0 properly paired (0.38%:nan%) | |
| 0.37 bam/SRR1972761.bam 146 + 0 properly paired (0.37%:nan%) | |
| 0.37 bam/SRR1735123.bam 146 + 0 properly paired (0.37%:nan%) | |
| 0.37 bam/SRR1735044.bam 148 + 0 properly paired (0.37%:nan%) | |
| 0.36 bam/SRR1735213.bam 142 + 0 properly paired (0.36%:nan%) | |
| 0.35 bam/SRR1972788.bam 140 + 0 properly paired (0.35%:nan%) | |
| 0.34 bam/SRR1553609.bam 138 + 0 properly paired (0.34%:nan%) | |
| 0.33 bam/SRR1972858.bam 130 + 0 properly paired (0.33%:nan%) | |
| 0.33 bam/SRR1972727.bam 134 + 0 properly paired (0.33%:nan%) | |
| 0.33 bam/SRR1735190.bam 130 + 0 properly paired (0.33%:nan%) | |
| 0.33 bam/SRR1735099.bam 134 + 0 properly paired (0.33%:nan%) | |
| 0.33 bam/SRR1553525.bam 134 + 0 properly paired (0.33%:nan%) | |
| 0.32 bam/SRR1972906.bam 128 + 0 properly paired (0.32%:nan%) | |
| 0.32 bam/SRR1735142.bam 126 + 0 properly paired (0.32%:nan%) | |
| 0.32 bam/SRR1553551.bam 128 + 0 properly paired (0.32%:nan%) | |
| 0.31 bam/SRR1972907.bam 124 + 0 properly paired (0.31%:nan%) | |
| 0.31 bam/SRR1735259.bam 124 + 0 properly paired (0.31%:nan%) | |
| 0.30 bam/SRR1972903.bam 118 + 0 properly paired (0.30%:nan%) | |
| 0.30 bam/SRR1972864.bam 122 + 0 properly paired (0.30%:nan%) | |
| 0.30 bam/SRR1972776.bam 122 + 0 properly paired (0.30%:nan%) | |
| 0.30 bam/SRR1735152.bam 118 + 0 properly paired (0.30%:nan%) | |
| 0.30 bam/SRR1735094.bam 118 + 0 properly paired (0.30%:nan%) | |
| 0.30 bam/SRR1735066.bam 122 + 0 properly paired (0.30%:nan%) | |
| 0.30 bam/SRR1735000.bam 122 + 0 properly paired (0.30%:nan%) | |
| 0.29 bam/SRR1972922.bam 116 + 0 properly paired (0.29%:nan%) | |
| 0.29 bam/SRR1972789.bam 114 + 0 properly paired (0.29%:nan%) | |
| 0.29 bam/SRR1972769.bam 114 + 0 properly paired (0.29%:nan%) | |
| 0.29 bam/SRR1972609.bam 116 + 0 properly paired (0.29%:nan%) | |
| 0.29 bam/SRR1553537.bam 116 + 0 properly paired (0.29%:nan%) | |
| 0.27 bam/SRR1972861.bam 108 + 0 properly paired (0.27%:nan%) | |
| 0.27 bam/SRR1972746.bam 110 + 0 properly paired (0.27%:nan%) | |
| 0.27 bam/SRR1735127.bam 110 + 0 properly paired (0.27%:nan%) | |
| 0.27 bam/SRR1735080.bam 110 + 0 properly paired (0.27%:nan%) | |
| 0.27 bam/SRR1735007.bam 110 + 0 properly paired (0.27%:nan%) | |
| 0.27 bam/SRR1553554.bam 108 + 0 properly paired (0.27%:nan%) | |
| 0.26 bam/SRR1972963.bam 104 + 0 properly paired (0.26%:nan%) | |
| 0.26 bam/SRR1972728.bam 106 + 0 properly paired (0.26%:nan%) | |
| 0.26 bam/SRR1735129.bam 104 + 0 properly paired (0.26%:nan%) | |
| 0.26 bam/SRR1735012.bam 102 + 0 properly paired (0.26%:nan%) | |
| 0.26 bam/SRR1735009.bam 102 + 0 properly paired (0.26%:nan%) | |
| 0.26 bam/SRR1553553.bam 102 + 0 properly paired (0.26%:nan%) | |
| 0.25 bam/SRR1972773.bam 98 + 0 properly paired (0.25%:nan%) | |
| 0.25 bam/SRR1735192.bam 100 + 0 properly paired (0.25%:nan%) | |
| 0.25 bam/SRR1735125.bam 100 + 0 properly paired (0.25%:nan%) | |
| 0.25 bam/SRR1735115.bam 100 + 0 properly paired (0.25%:nan%) | |
| 0.24 bam/SRR1735204.bam 96 + 0 properly paired (0.24%:nan%) | |
| 0.24 bam/SRR1734999.bam 96 + 0 properly paired (0.24%:nan%) | |
| 0.23 bam/SRR1735147.bam 94 + 0 properly paired (0.23%:nan%) | |
| 0.23 bam/SRR1735114.bam 92 + 0 properly paired (0.23%:nan%) | |
| 0.22 bam/SRR1972687.bam 86 + 0 properly paired (0.22%:nan%) | |
| 0.22 bam/SRR1735235.bam 86 + 0 properly paired (0.22%:nan%) | |
| 0.22 bam/SRR1735230.bam 90 + 0 properly paired (0.22%:nan%) | |
| 0.22 bam/SRR1735229.bam 88 + 0 properly paired (0.22%:nan%) | |
| 0.22 bam/SRR1735209.bam 88 + 0 properly paired (0.22%:nan%) | |
| 0.22 bam/SRR1735131.bam 88 + 0 properly paired (0.22%:nan%) | |
| 0.22 bam/SRR1735026.bam 90 + 0 properly paired (0.22%:nan%) | |
| 0.21 bam/SRR1972843.bam 84 + 0 properly paired (0.21%:nan%) | |
| 0.21 bam/SRR1972798.bam 82 + 0 properly paired (0.21%:nan%) | |
| 0.21 bam/SRR1735065.bam 84 + 0 properly paired (0.21%:nan%) | |
| 0.20 bam/SRR1972917.bam 80 + 0 properly paired (0.20%:nan%) | |
| 0.20 bam/SRR1972807.bam 80 + 0 properly paired (0.20%:nan%) | |
| 0.20 bam/SRR1735109.bam 80 + 0 properly paired (0.20%:nan%) | |
| 0.19 bam/SRR1972975.bam 74 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1972850.bam 74 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1972704.bam 78 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1972683.bam 78 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1972677.bam 78 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1972669.bam 78 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1735226.bam 76 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1735215.bam 74 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1735180.bam 76 + 0 properly paired (0.19%:nan%) | |
| 0.19 bam/SRR1735138.bam 76 + 0 properly paired (0.19%:nan%) | |
| 0.18 bam/SRR1972859.bam 70 + 0 properly paired (0.18%:nan%) | |
| 0.18 bam/SRR1735188.bam 72 + 0 properly paired (0.18%:nan%) | |
| 0.17 bam/SRR1972938.bam 68 + 0 properly paired (0.17%:nan%) | |
| 0.17 bam/SRR1972791.bam 68 + 0 properly paired (0.17%:nan%) | |
| 0.17 bam/SRR1972762.bam 68 + 0 properly paired (0.17%:nan%) | |
| 0.17 bam/SRR1972730.bam 68 + 0 properly paired (0.17%:nan%) | |
| 0.17 bam/SRR1735261.bam 68 + 0 properly paired (0.17%:nan%) | |
| 0.17 bam/SRR1553610.bam 68 + 0 properly paired (0.17%:nan%) | |
| 0.16 bam/SRR1972920.bam 62 + 0 properly paired (0.16%:nan%) | |
| 0.16 bam/SRR1972891.bam 66 + 0 properly paired (0.16%:nan%) | |
| 0.16 bam/SRR1735154.bam 62 + 0 properly paired (0.16%:nan%) | |
| 0.15 bam/SRR1972954.bam 60 + 0 properly paired (0.15%:nan%) | |
| 0.15 bam/SRR1972794.bam 60 + 0 properly paired (0.15%:nan%) | |
| 0.15 bam/SRR1972680.bam 60 + 0 properly paired (0.15%:nan%) | |
| 0.15 bam/SRR1735176.bam 60 + 0 properly paired (0.15%:nan%) | |
| 0.15 bam/SRR1735077.bam 60 + 0 properly paired (0.15%:nan%) | |
| 0.15 bam/SRR1553607.bam 60 + 0 properly paired (0.15%:nan%) | |
| 0.14 bam/SRR1972708.bam 56 + 0 properly paired (0.14%:nan%) | |
| 0.14 bam/SRR1735264.bam 54 + 0 properly paired (0.14%:nan%) | |
| 0.14 bam/SRR1735260.bam 58 + 0 properly paired (0.14%:nan%) | |
| 0.13 bam/SRR1735201.bam 52 + 0 properly paired (0.13%:nan%) | |
| 0.12 bam/SRR1972960.bam 50 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1972953.bam 48 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1972933.bam 46 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1972729.bam 50 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1972678.bam 46 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1735247.bam 48 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1735186.bam 46 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1735182.bam 46 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1735149.bam 46 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1735098.bam 46 + 0 properly paired (0.12%:nan%) | |
| 0.12 bam/SRR1734992.bam 48 + 0 properly paired (0.12%:nan%) | |
| 0.10 bam/SRR1972941.bam 40 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1972935.bam 40 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1972919.bam 42 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1972851.bam 42 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1972747.bam 42 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1972745.bam 42 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1972656.bam 40 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1735207.bam 40 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1735174.bam 38 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1735089.bam 38 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1735049.bam 38 + 0 properly paired (0.10%:nan%) | |
| 0.10 bam/SRR1553420.bam 40 + 0 properly paired (0.10%:nan%) | |
| 0.09 bam/SRR1972854.bam 34 + 0 properly paired (0.09%:nan%) | |
| 0.09 bam/SRR1972663.bam 36 + 0 properly paired (0.09%:nan%) | |
| 0.08 bam/SRR1735139.bam 30 + 0 properly paired (0.08%:nan%) | |
| 0.08 bam/SRR1735062.bam 32 + 0 properly paired (0.08%:nan%) | |
| 0.08 bam/SRR1553416.bam 30 + 0 properly paired (0.08%:nan%) | |
| 0.07 bam/SRR1972914.bam 28 + 0 properly paired (0.07%:nan%) | |
| 0.07 bam/SRR1972696.bam 26 + 0 properly paired (0.07%:nan%) | |
| 0.07 bam/SRR1972607.bam 28 + 0 properly paired (0.07%:nan%) | |
| 0.07 bam/SRR1735238.bam 28 + 0 properly paired (0.07%:nan%) | |
| 0.06 bam/SRR1735211.bam 24 + 0 properly paired (0.06%:nan%) | |
| 0.06 bam/SRR1735048.bam 24 + 0 properly paired (0.06%:nan%) | |
| 0.05 bam/SRR1735156.bam 22 + 0 properly paired (0.05%:nan%) | |
| 0.00 bam/SRR1972976.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972974.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972952.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972950.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972947.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972946.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972945.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972944.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972943.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972942.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972940.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972939.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972937.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972936.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972931.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972930.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972929.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972927.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972926.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972924.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972923.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972916.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972915.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972913.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972911.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972910.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972909.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972908.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972905.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972904.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972899.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972898.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972897.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972895.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972894.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972893.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972892.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972890.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972889.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972888.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972885.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972883.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972881.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972878.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972877.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972876.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972875.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972874.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972873.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972872.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972871.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972870.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972869.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972868.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972867.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972866.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972865.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972862.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972853.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972849.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972848.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972847.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972840.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972839.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972830.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972815.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972814.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972790.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972759.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972752.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972750.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972748.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972725.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972723.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972722.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972719.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972717.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972716.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972715.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972714.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972713.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972712.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972709.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972707.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972706.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972705.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972703.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972702.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972700.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972699.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972698.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972695.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972694.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972693.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972692.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972691.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972690.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972689.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972688.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972686.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972685.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972684.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972682.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972681.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972679.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972676.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972675.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972674.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972673.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972672.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972671.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972670.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972668.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972665.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972662.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972661.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972660.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972659.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972658.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972657.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972655.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972653.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972652.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972649.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972648.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972647.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972646.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972645.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972642.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972641.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972638.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972636.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972635.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972634.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972633.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972632.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972631.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972630.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972628.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972625.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972624.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972623.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972622.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972621.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972620.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972619.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972616.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972614.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972611.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972610.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972608.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972606.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972605.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972604.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972603.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1972602.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735265.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735256.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735255.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735254.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735253.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735252.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735249.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735246.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735244.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735242.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735240.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735233.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735232.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735227.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735225.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735224.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735221.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735220.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735219.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735218.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735217.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735216.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735212.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735210.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735205.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735203.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735202.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735200.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735199.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735197.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735196.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735194.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735193.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735191.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735187.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735184.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735183.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735179.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735168.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735167.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735166.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735165.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735163.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735162.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735161.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735159.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735158.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735155.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735153.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735151.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735150.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735146.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735145.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735144.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735141.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735137.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735133.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735132.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735130.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735128.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735126.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735124.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735122.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735121.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735120.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735119.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735117.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735116.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735113.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735112.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735106.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735105.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735104.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735103.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735102.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735101.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735100.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735097.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735095.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735093.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735092.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735091.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735088.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735086.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735084.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735083.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735082.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735076.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735073.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735069.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735068.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735067.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735063.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735059.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735057.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735056.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735055.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735054.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735053.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735052.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735050.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735046.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735043.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735042.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735037.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735034.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735033.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735031.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735030.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735028.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735027.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735024.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735021.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735020.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735018.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735015.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735014.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735013.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735010.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735008.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735006.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735005.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735002.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1735001.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1734997.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1734995.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1734994.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1734991.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1734990.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1734988.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564837.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564836.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564835.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564834.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564833.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564832.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564831.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564830.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564829.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564828.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564827.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564826.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564825.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564824.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564823.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564822.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564821.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564820.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564819.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564818.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564817.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564816.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564815.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564814.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564813.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564812.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564811.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564810.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564809.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564808.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564807.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564806.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564805.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564804.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1564803.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1553470.bam 0 + 0 properly paired (0.00%:nan%) | |
| 0.00 bam/SRR1553417.bam 0 + 0 properly paired (0.00%:nan%) | |
I was curious to find out where the more than 2.5 million reads not mapping to Ebola come from. First I mapped them to some human genes (dhfr, actb, 18S rRNA), but does not got any hits. The serum seams to be free of human RNA. Then I mapped to some bacterial rRNA operons from several phyla (proteobacteria, firmicutes, actinomycete). I got diffuse mapping with thousands of reads for all of them. Thus the major fraction of RNA in this sample is bacterial rRNA from a broad spectrum of species. Presumably the serum was stored a room temperature for an elevated period of time.
I also noted that all of the read sets with high amount of reads mapping to Ebola belong to the 99 fully assembled sequences submitted to Genbank along with the Science paper. The other read sets seam to be just the trash of that great study.
That's pretty cool. Thanks for sharing, I wish more studies had posts like this were we can talks about it.
Also since we are talking about it, here is the original post that I was trying to reproduce: Mission Impossible: you have 1 minute to analyze the Ebola Genome As it turns out this time one needs to pick the right data.
I've selected the first 20K (paired) reads from the samples so that I could map all samples (891). I wonder was the mapping percentage 0.25% a good approximation?. But you are right in that this may be sufficient. I have also noted low sequencing accuracy for the samples with low coverage.
The ratio of mapped reads is 0.3 % in my mapping, which is very close to your result obtained with only the first 20K.