Alternatives to TCGA and ICGC? Especially for hindbrain and pediatric brain cancer?
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9.5 years ago
ad ▴ 30

Hi, TCGA is wonderful but unfortunately it doesn't seem to have some of the types of cancer I'm interested in. ICGC has a ton of cancers including the TCGA stuff but a lot of the data is sparse and again doesn't include what I'm looking for. Does anybody know of any alternative databases I could look through? I'm especially interested in RNAseq data, preferably including noncoding RNAs of hindbrain and pediatric brain tumors.

Thanks

RNA-Seq gene cancer • 2.7k views
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9.5 years ago
alolex ▴ 960

I am not aware of a database that contains the specific data you are interested in, but I found these that might have something you could use:

http://www.explorepcgp.org

http://glioblastoma.alleninstitute.org

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thanks! Any other suggestions are welcome too

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