Entering edit mode
9.6 years ago
Jautis
▴
580
Hi, I have a reference genome (fasta) and list of genotypes (vcf) for one individual. I want to make a haploid genome file by randomly selecting one of the individual's alleles at each variable site. I would use GATK's alternate reference maker, but I do not want to bias my choice to either the reference or non-reference allele. Anybody know how I can do this?
Thank you!
Very useful! Will you teach me the ways of the force?
You don't need a teacher, just start coding to solve problems like this.