Entering edit mode
9.4 years ago
Ishtiaq Ahmad Khan
▴
70
I run command based VEP for annotation. I want to extract only NOVEL SNPSs according to rs ID in first column. How I can do this.
1_17538_C/T 1:17538 T ENSG00000278267 ENST00000619216 Transcript upstream_gene_variant -
1_17538_C/T 1:17538 T ENSG00000223972 ENST00000456328 Transcript downstream_gene_variant -
1_17538_C/T 1:17538 T ENSG00000227232 ENST00000488147 Transcript
1_17538_C/T 1:17538 T ENSG00000223972 ENST00000450305 Transcript downstream_gene_variant -
rs201057270 1:17614 A ENSG00000278267 ENST00000619216 Transcript upstream_gene_variant - - rs201057270 1:17614 A ENSG00000223972 ENST00000456328 Transcript downstream_gene_variant - rs201057270 1:17614 A ENSG00000227232 ENST00000488147 Transcript
rs201057270 1:17614 A ENSG00000223972 ENST00000450305 Transcript downstream_gene_variant -
1_19342_G/A 1:19342 A ENSG00000278267 ENST00000619216 Transcript upstream_gene_variant -
1_19342_G/A 1:19342 A ENSG00000223972 ENST00000456328 Transcript downstream_gene_variant -
1_19342_G/A 1:19342 A ENSG00000227232 ENST00000488147 Transcript
Many Thanks