bisulfite mode in IGV

Question

[kanwarjag]

I read IGV guidelines and it says preferences> Advanced option we can switch to Bisulfite mode. However I don't see any option. How one can switch to Bisulfite mode in IGV.

Thanks

Answer 1

[dariober]

Assuming you have loaded an alignment file (bam), than right-click on that track. You should see "color alignments by" which among other options has "bisulfite mode" which in turn has other options, e.g "CG". This in IGV 2.3.32.